Chromosome Research, volume 21, issue 6-7, pages 587-600
Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response
1
Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, USA
|
Publication type: Journal Article
Publication date: 2013-11-20
Journal:
Chromosome Research
Quartile SCImago
Q2
Quartile WOS
Q3
Impact factor: 2.6
ISSN: 09673849, 15736849
Genetics
Abstract
Transposons are mobile genetic elements that are a major constituent of most genomes. Organisms regulate transposable element expression, transposition, and insertion site preference, mitigating the genome instability caused by uncontrolled transposition. A recent burst of research has demonstrated the critical role of small non-coding RNAs in regulating transposition in fungi, plants, and animals. While mechanistically distinct, these pathways work through a conserved paradigm. The presence of a transposon is communicated by the presence of its RNA or by its integration into specific genomic loci. These signals are then translated into small non-coding RNAs that guide epigenetic modifications and gene silencing back to the transposon. In addition to being regulated by the host, transposable elements are themselves capable of influencing host gene expression. Transposon expression is responsive to environmental signals, and many transposons are activated by various cellular stresses. TEs can confer local gene regulation by acting as enhancers and can also confer global gene regulation through their non-coding RNAs. Thus, transposable elements can act as stress-responsive regulators that control host gene expression in cis and trans.
Citations by journals
1
2
|
|
International Journal of Molecular Sciences
|
International Journal of Molecular Sciences
2 publications, 4.65%
|
Molecular Biology and Evolution
|
Molecular Biology and Evolution
2 publications, 4.65%
|
Vavilovskii Zhurnal Genetiki i Selektsii (Vavilov Journal of Genetics and Breeding)
|
Vavilovskii Zhurnal Genetiki i Selektsii (Vavilov Journal of Genetics and Breeding)
2 publications, 4.65%
|
Molecular Biology
|
Molecular Biology
1 publication, 2.33%
|
Cytogenetic and Genome Research
|
Cytogenetic and Genome Research
1 publication, 2.33%
|
International Journal of Molecular Medicine
|
International Journal of Molecular Medicine
1 publication, 2.33%
|
Scientific Reports
|
Scientific Reports
1 publication, 2.33%
|
Genes
|
Genes
1 publication, 2.33%
|
Frontiers in Plant Science
|
Frontiers in Plant Science
1 publication, 2.33%
|
Molecular Breeding
|
Molecular Breeding
1 publication, 2.33%
|
Biology Direct
|
Biology Direct
1 publication, 2.33%
|
Journal of Genetics
|
Journal of Genetics
1 publication, 2.33%
|
Chromosoma
|
Chromosoma
1 publication, 2.33%
|
Plant Molecular Biology Reporter
|
Plant Molecular Biology Reporter
1 publication, 2.33%
|
Nature Communications
|
Nature Communications
1 publication, 2.33%
|
BMC Microbiology
|
BMC Microbiology
1 publication, 2.33%
|
PLoS ONE
|
PLoS ONE
1 publication, 2.33%
|
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms
|
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms
1 publication, 2.33%
|
Trends in Genetics
|
Trends in Genetics
1 publication, 2.33%
|
Cell Reports
|
Cell Reports
1 publication, 2.33%
|
Functional Ecology
|
Functional Ecology
1 publication, 2.33%
|
Plant Journal
|
Plant Journal
1 publication, 2.33%
|
Advances in Gerontology
|
Advances in Gerontology
1 publication, 2.33%
|
Russian Journal of Developmental Biology
|
Russian Journal of Developmental Biology
1 publication, 2.33%
|
Stress
|
Stress
1 publication, 2.33%
|
Nucleic Acids Research
|
Nucleic Acids Research
1 publication, 2.33%
|
Science advances
|
Science advances
1 publication, 2.33%
|
Journal of Bacteriology
|
Journal of Bacteriology
1 publication, 2.33%
|
Current Topics in Behavioral Neurosciences
|
Current Topics in Behavioral Neurosciences
1 publication, 2.33%
|
1
2
|
Citations by publishers
2
4
6
8
10
|
|
Springer Nature
|
Springer Nature
10 publications, 23.26%
|
Multidisciplinary Digital Publishing Institute (MDPI)
|
Multidisciplinary Digital Publishing Institute (MDPI)
4 publications, 9.3%
|
Elsevier
|
Elsevier
4 publications, 9.3%
|
Pleiades Publishing
|
Pleiades Publishing
3 publications, 6.98%
|
Wiley
|
Wiley
3 publications, 6.98%
|
Oxford University Press
|
Oxford University Press
3 publications, 6.98%
|
Institute of Cytology and Genetics SB RAS
|
Institute of Cytology and Genetics SB RAS
2 publications, 4.65%
|
S. Karger AG
|
S. Karger AG
1 publication, 2.33%
|
Spandidos Publications
|
Spandidos Publications
1 publication, 2.33%
|
Frontiers Media S.A.
|
Frontiers Media S.A.
1 publication, 2.33%
|
Public Library of Science (PLoS)
|
Public Library of Science (PLoS)
1 publication, 2.33%
|
Taylor & Francis
|
Taylor & Francis
1 publication, 2.33%
|
American Association for the Advancement of Science (AAAS)
|
American Association for the Advancement of Science (AAAS)
1 publication, 2.33%
|
American Society for Microbiology
|
American Society for Microbiology
1 publication, 2.33%
|
American Association for Cancer Research (AACR)
|
American Association for Cancer Research (AACR)
1 publication, 2.33%
|
Annual Reviews
|
Annual Reviews
1 publication, 2.33%
|
Cold Spring Harbor Laboratory
|
Cold Spring Harbor Laboratory
1 publication, 2.33%
|
American Society for Cell Biology (ASCB)
|
American Society for Cell Biology (ASCB)
1 publication, 2.33%
|
2
4
6
8
10
|
- We do not take into account publications that without a DOI.
- Statistics recalculated only for publications connected to researchers, organizations and labs registered on the platform.
- Statistics recalculated weekly.
{"yearsCitations":{"type":"bar","data":{"show":true,"labels":[2014,2015,2016,2017,2018,2019,2020,2021,2022,2023,2024],"ids":[0,0,0,0,0,0,0,0,0,0,0],"codes":[0,0,0,0,0,0,0,0,0,0,0],"imageUrls":["","","","","","","","","","",""],"datasets":[{"label":"Citations number","data":[4,5,7,6,6,8,1,0,2,2,2],"backgroundColor":["#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6"],"percentage":["9.3","11.63","16.28","13.95","13.95","18.6","2.33",0,"4.65","4.65","4.65"],"barThickness":null}]},"options":{"indexAxis":"x","maintainAspectRatio":true,"scales":{"y":{"ticks":{"precision":0,"autoSkip":false,"font":{"family":"Montserrat"},"color":"#000000"}},"x":{"ticks":{"stepSize":1,"precision":0,"font":{"family":"Montserrat"},"color":"#000000"}}},"plugins":{"legend":{"position":"top","labels":{"font":{"family":"Montserrat"},"color":"#000000"}},"title":{"display":true,"text":"Citations per year","font":{"size":24,"family":"Montserrat","weight":600},"color":"#000000"}}}},"journals":{"type":"bar","data":{"show":true,"labels":["International Journal of Molecular Sciences","Molecular Biology and Evolution","Vavilovskii Zhurnal Genetiki i Selektsii (Vavilov Journal of Genetics and Breeding)","Molecular Biology","Cytogenetic and Genome Research","International Journal of Molecular Medicine","Scientific Reports","Genes","Frontiers in Plant Science","Molecular Breeding","Biology Direct","Journal of Genetics","Chromosoma","Plant Molecular Biology Reporter","Nature Communications","BMC Microbiology","PLoS ONE","Biochimica et Biophysica Acta - Gene Regulatory Mechanisms","Trends in Genetics","Cell Reports","Functional Ecology","Plant Journal","Advances in Gerontology","Russian Journal of Developmental Biology","Stress","Nucleic Acids Research","Science advances","Journal of Bacteriology","Current Topics in Behavioral Neurosciences"],"ids":[14627,2498,6295,1134,19960,16008,13767,8879,1823,7094,21810,6837,10452,9431,3231,526,24963,14531,14739,9130,21252,18129,9266,25437,8179,23904,23003,21892,18467],"codes":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"imageUrls":["\/storage\/images\/resized\/MjH1ITP7lMYGxeqUZfkt2BnVLgjkk413jwBV97XX_medium.webp","\/storage\/images\/resized\/yNSijlgQghQF53VZuyFLA30CKDe4j3HK74Vtpnxa_medium.webp","\/storage\/images\/resized\/PXgwg8UmRmRiOAWNAveYBmhsgwx6CUfCKiAfGFDj_medium.webp","\/storage\/images\/resized\/oZgeErrVFhuDksyqFURLvYS1wtVSBWczh001igGo_medium.webp","\/storage\/images\/resized\/dzjTgJDYMoGfxybjlxLdd3z4gHYG42WZR0UxSYzy_medium.webp","\/storage\/images\/resized\/8zKfOwdd5XirYzTQfqwp7U8IEQc8ckIOjyYQSBkk_medium.webp","\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp","\/storage\/images\/resized\/MjH1ITP7lMYGxeqUZfkt2BnVLgjkk413jwBV97XX_medium.webp","\/storage\/images\/resized\/4QWA67eqfcfyOiA8Wk7YnqroHFqQbTsmDJUYTCTg_medium.webp","\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp","\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp","\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp","\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp","\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp","\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp","\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp","\/storage\/images\/resized\/PRGhlgB4OKRltSNtT39eA6wlnOTGRap1QQ6FQHih_medium.webp","\/storage\/images\/resized\/GDnYOu1UpMMfMMRV6Aqle4H0YLLsraeD9IP9qScG_medium.webp","\/storage\/images\/resized\/GDnYOu1UpMMfMMRV6Aqle4H0YLLsraeD9IP9qScG_medium.webp","\/storage\/images\/resized\/GDnYOu1UpMMfMMRV6Aqle4H0YLLsraeD9IP9qScG_medium.webp","\/storage\/images\/resized\/bRyGpdm98BkAUYiK1YFNpl5Z7hPu6Gd87gbIeuG3_medium.webp","\/storage\/images\/resized\/bRyGpdm98BkAUYiK1YFNpl5Z7hPu6Gd87gbIeuG3_medium.webp","\/storage\/images\/resized\/oZgeErrVFhuDksyqFURLvYS1wtVSBWczh001igGo_medium.webp","\/storage\/images\/resized\/oZgeErrVFhuDksyqFURLvYS1wtVSBWczh001igGo_medium.webp","\/storage\/images\/resized\/5YZtvLvkPZuc2JHOaZsjCvGSHFCuC3drUwN3YAc5_medium.webp","\/storage\/images\/resized\/yNSijlgQghQF53VZuyFLA30CKDe4j3HK74Vtpnxa_medium.webp","\/storage\/images\/resized\/s10mcsCV4OAUg9O2KrqOquQC0PhyLMI8hUUkuflM_medium.webp","\/storage\/images\/resized\/VPE7q24PXoHr5SS2SqfEgxccSMUxWLfZINOX60uo_medium.webp","\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp"],"datasets":[{"label":"","data":[2,2,2,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1],"backgroundColor":["#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6"],"percentage":[4.65,4.65,4.65,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33],"barThickness":13}]},"options":{"indexAxis":"y","maintainAspectRatio":false,"scales":{"y":{"ticks":{"precision":0,"autoSkip":false,"font":{"family":"Montserrat"},"color":"#000000"}},"x":{"ticks":{"stepSize":null,"precision":0,"font":{"family":"Montserrat"},"color":"#000000"}}},"plugins":{"legend":{"position":"top","labels":{"font":{"family":"Montserrat"},"color":"#000000"}},"title":{"display":true,"text":"Journals","font":{"size":24,"family":"Montserrat","weight":600},"color":"#000000"}}}},"publishers":{"type":"bar","data":{"show":true,"labels":["Springer Nature","Multidisciplinary Digital Publishing Institute (MDPI)","Elsevier","Pleiades Publishing","Wiley","Oxford University Press","Institute of Cytology and Genetics SB RAS","S. Karger AG","Spandidos Publications","Frontiers Media S.A.","Public Library of Science (PLoS)","Taylor & Francis","American Association for the Advancement of Science (AAAS)","American Society for Microbiology","American Association for Cancer Research (AACR)","Annual Reviews","Cold Spring Harbor Laboratory","American Society for Cell Biology (ASCB)"],"ids":[8,202,17,101,11,19,7632,6998,1097,208,344,18,189,142,2286,6941,6909,4151],"codes":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"imageUrls":["\/storage\/images\/resized\/voXLqlsvTwv5p3iMQ8Dhs95nqB4AXOG7Taj7G4ra_medium.webp","\/storage\/images\/resized\/MjH1ITP7lMYGxeqUZfkt2BnVLgjkk413jwBV97XX_medium.webp","\/storage\/images\/resized\/GDnYOu1UpMMfMMRV6Aqle4H0YLLsraeD9IP9qScG_medium.webp","\/storage\/images\/resized\/oZgeErrVFhuDksyqFURLvYS1wtVSBWczh001igGo_medium.webp","\/storage\/images\/resized\/bRyGpdm98BkAUYiK1YFNpl5Z7hPu6Gd87gbIeuG3_medium.webp","\/storage\/images\/resized\/yNSijlgQghQF53VZuyFLA30CKDe4j3HK74Vtpnxa_medium.webp","\/storage\/images\/resized\/PXgwg8UmRmRiOAWNAveYBmhsgwx6CUfCKiAfGFDj_medium.webp","\/storage\/images\/resized\/dzjTgJDYMoGfxybjlxLdd3z4gHYG42WZR0UxSYzy_medium.webp","\/storage\/images\/resized\/8zKfOwdd5XirYzTQfqwp7U8IEQc8ckIOjyYQSBkk_medium.webp","\/storage\/images\/resized\/4QWA67eqfcfyOiA8Wk7YnqroHFqQbTsmDJUYTCTg_medium.webp","\/storage\/images\/resized\/PRGhlgB4OKRltSNtT39eA6wlnOTGRap1QQ6FQHih_medium.webp","\/storage\/images\/resized\/5YZtvLvkPZuc2JHOaZsjCvGSHFCuC3drUwN3YAc5_medium.webp","\/storage\/images\/resized\/s10mcsCV4OAUg9O2KrqOquQC0PhyLMI8hUUkuflM_medium.webp","\/storage\/images\/resized\/VPE7q24PXoHr5SS2SqfEgxccSMUxWLfZINOX60uo_medium.webp","\/storage\/images\/resized\/cfuVw6XIq2mATDNJdXiose3W8qYbkmaVSpHoP8XL_medium.webp","\/storage\/images\/resized\/A7oGMwx1m3fFJlKJvQUVra8h0itmEa7JZW0q3Q0b_medium.webp","\/storage\/images\/resized\/hg4jJjT8wVGtHstBCc0zk465Mg9pLx3G4odCDOqE_medium.webp","\/storage\/images\/resized\/1pFWD0EzQnc5egizpglbyNDhAbHCAVj1O7hBchfP_medium.webp"],"datasets":[{"label":"","data":[10,4,4,3,3,3,2,1,1,1,1,1,1,1,1,1,1,1],"backgroundColor":["#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6","#3B82F6"],"percentage":[23.26,9.3,9.3,6.98,6.98,6.98,4.65,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33,2.33],"barThickness":13}]},"options":{"indexAxis":"y","maintainAspectRatio":false,"scales":{"y":{"ticks":{"precision":0,"autoSkip":false,"font":{"family":"Montserrat"},"color":"#000000"}},"x":{"ticks":{"stepSize":null,"precision":0,"font":{"family":"Montserrat"},"color":"#000000"}}},"plugins":{"legend":{"position":"top","labels":{"font":{"family":"Montserrat"},"color":"#000000"}},"title":{"display":true,"text":"Publishers","font":{"size":24,"family":"Montserrat","weight":600},"color":"#000000"}}}}}
Metrics
Cite this
GOST |
RIS |
BibTex |
MLA
Cite this
GOST
Copy
Wheeler B. S. Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response // Chromosome Research. 2013. Vol. 21. No. 6-7. pp. 587-600.
GOST all authors (up to 50)
Copy
Wheeler B. S. Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response // Chromosome Research. 2013. Vol. 21. No. 6-7. pp. 587-600.
Cite this
RIS
Copy
TY - JOUR
DO - 10.1007/s10577-013-9394-4
UR - https://doi.org/10.1007%2Fs10577-013-9394-4
TI - Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response
T2 - Chromosome Research
AU - Wheeler, Bayly S.
PY - 2013
DA - 2013/11/20 00:00:00
PB - Springer Nature
SP - 587-600
IS - 6-7
VL - 21
SN - 0967-3849
SN - 1573-6849
ER -
Cite this
BibTex
Copy
@article{2013_Wheeler,
author = {Bayly S. Wheeler},
title = {Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response},
journal = {Chromosome Research},
year = {2013},
volume = {21},
publisher = {Springer Nature},
month = {nov},
url = {https://doi.org/10.1007%2Fs10577-013-9394-4},
number = {6-7},
pages = {587--600},
doi = {10.1007/s10577-013-9394-4}
}
Cite this
MLA
Copy
Wheeler, Bayly S.. “Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response.” Chromosome Research, vol. 21, no. 6-7, Nov. 2013, pp. 587-600. https://doi.org/10.1007%2Fs10577-013-9394-4.