Cell, volume 113, issue 6, pages 789-801

Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement

Gao Haixiao ¹

Sengupta Jayati ²

Valle Mikel ¹

Korostelev Andrei ³

Eswar Narayanan ⁴

Stagg Scott M. ⁵

VAN ROEY Patrick ²

Agrawal Rajendra K. ^{6, 7}

Harvey Stephen B. ⁵

Sali Andrej ⁴

Chapman Michael W. ³

Frank Joseph L. ^{1, 6, 7}

Hide authors affiliations Show authors affiliations: 7 affiliations

Howard Hughes Medical Institute, Health Research, Inc., Empire State Plaza, Albany, NY 12201 USA |

Wadsworth Center, Empire State Plaza, Albany, NY 12201, USA |

Kasha Laboratory, Institute of Molecular Biophysics and Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306 USA |

⁴

Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry and California Institute for Quantitative Biomedical Research, University of California, San Francisco, San Francisco, CA 94143 USA |

⁵

School of Biology, Georgia Institute of Technology, Atlanta, GA, 30332, USA |

⁶

Department of Biomedical Sciences, State University of New York at Albany, Empire State Plaza, Albany, NY 12201 USA |

⁷

Wadsworth Center, Empire State Plaza, Albany, NY 12201 USA |

Publication type: Journal Article

Publication date: 2003-06-01

Elsevier

Journal: Cell

Quartile SCImago

Quartile WOS

Impact factor: 64.5

ISSN: 00928674, 10974172

DOI: 10.1016/S0092-8674(03)00427-6

Copy DOI

General Biochemistry, Genetics and Molecular Biology

Abstract

Cryo-EM density maps showing the 70S ribosome of E. coli in two different functional states related by a ratchet-like motion were analyzed using real-space refinement. Comparison of the two resulting atomic models shows that the ribosome changes from a compact structure to a looser one, coupled with the rearrangement of many of the proteins. Furthermore, in contrast to the unchanged inter-subunit bridges formed wholly by RNA, the bridges involving proteins undergo large conformational changes following the ratchet-like motion, suggesting an important role of ribosomal proteins in facilitating the dynamics of translation.

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Citations by journals

	5 10 15 20 25
Journal of Structural Biology	Journal of Structural Biology, 21, 8.5% Journal of Structural Biology 21 publications, 8.5%
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RNA	RNA, 11, 4.45% RNA 11 publications, 4.45%
Structure	Structure, 10, 4.05% Structure 10 publications, 4.05%
Proceedings of the National Academy of Sciences of the United States of America	Proceedings of the National Academy of Sciences of the United States of America, 9, 3.64% Proceedings of the National Academy of Sciences of the United States of America 9 publications, 3.64%
FEBS Letters	FEBS Letters, 7, 2.83% FEBS Letters 7 publications, 2.83%
Molecular Cell	Molecular Cell, 7, 2.83% Molecular Cell 7 publications, 2.83%
Current Opinion in Structural Biology	Current Opinion in Structural Biology, 7, 2.83% Current Opinion in Structural Biology 7 publications, 2.83%
Journal of Biological Chemistry	Journal of Biological Chemistry, 6, 2.43% Journal of Biological Chemistry 6 publications, 2.43%
Cell	Cell, 5, 2.02% Cell 5 publications, 2.02%
Biopolymers	Biopolymers, 5, 2.02% Biopolymers 5 publications, 2.02%
Biophysical Journal	Biophysical Journal, 4, 1.62% Biophysical Journal 4 publications, 1.62%
Molecular Biology	Molecular Biology, 3, 1.21% Molecular Biology 3 publications, 1.21%
International Journal of Molecular Sciences	International Journal of Molecular Sciences, 3, 1.21% International Journal of Molecular Sciences 3 publications, 1.21%
Molecular Genetics and Genomics	Molecular Genetics and Genomics, 3, 1.21% Molecular Genetics and Genomics 3 publications, 1.21%
Current Protocols in Bioinformatics	Current Protocols in Bioinformatics, 3, 1.21% Current Protocols in Bioinformatics 3 publications, 1.21%
EMBO Journal	EMBO Journal, 3, 1.21% EMBO Journal 3 publications, 1.21%
Scientific Reports	Scientific Reports, 2, 0.81% Scientific Reports 2 publications, 0.81%
Nature	Nature, 2, 0.81% Nature 2 publications, 0.81%
Nature Chemical Biology	Nature Chemical Biology, 2, 0.81% Nature Chemical Biology 2 publications, 0.81%
Nature Structural and Molecular Biology	Nature Structural and Molecular Biology, 2, 0.81% Nature Structural and Molecular Biology 2 publications, 0.81%
Physical Biology	Physical Biology, 2, 0.81% Physical Biology 2 publications, 0.81%
Journal of Plant Physiology	Journal of Plant Physiology, 2, 0.81% Journal of Plant Physiology 2 publications, 0.81%
Molecular and Cellular Proteomics	Molecular and Cellular Proteomics, 2, 0.81% Molecular and Cellular Proteomics 2 publications, 0.81%
Current Protocols in Protein Science	Current Protocols in Protein Science, 2, 0.81% Current Protocols in Protein Science 2 publications, 0.81%
Molecular Microbiology	Molecular Microbiology, 2, 0.81% Molecular Microbiology 2 publications, 0.81%
Biochemistry	Biochemistry, 2, 0.81% Biochemistry 2 publications, 0.81%
Journal of the American Chemical Society	Journal of the American Chemical Society, 2, 0.81% Journal of the American Chemical Society 2 publications, 0.81%
	5 10 15 20 25

Citations by publishers

	10 20 30 40 50 60 70 80 90
Elsevier	Elsevier, 84, 34.01% Elsevier 84 publications, 34.01%
Wiley	Wiley, 24, 9.72% Wiley 24 publications, 9.72%
Springer Nature	Springer Nature, 24, 9.72% Springer Nature 24 publications, 9.72%
Oxford University Press	Oxford University Press, 13, 5.26% Oxford University Press 13 publications, 5.26%
Cold Spring Harbor Laboratory	Cold Spring Harbor Laboratory, 11, 4.45% Cold Spring Harbor Laboratory 11 publications, 4.45%
Proceedings of the National Academy of Sciences (PNAS)	Proceedings of the National Academy of Sciences (PNAS), 9, 3.64% Proceedings of the National Academy of Sciences (PNAS) 9 publications, 3.64%
American Society for Biochemistry and Molecular Biology	American Society for Biochemistry and Molecular Biology, 8, 3.24% American Society for Biochemistry and Molecular Biology 8 publications, 3.24%
American Chemical Society (ACS)	American Chemical Society (ACS), 8, 3.24% American Chemical Society (ACS) 8 publications, 3.24%
Pleiades Publishing	Pleiades Publishing, 6, 2.43% Pleiades Publishing 6 publications, 2.43%
Biophysical Society	Biophysical Society, 4, 1.62% Biophysical Society 4 publications, 1.62%
Multidisciplinary Digital Publishing Institute (MDPI)	Multidisciplinary Digital Publishing Institute (MDPI), 4, 1.62% Multidisciplinary Digital Publishing Institute (MDPI) 4 publications, 1.62%
EMBO press	EMBO press, 4, 1.62% EMBO press 4 publications, 1.62%
IOP Publishing	IOP Publishing, 3, 1.21% IOP Publishing 3 publications, 1.21%
Taylor & Francis	Taylor & Francis, 3, 1.21% Taylor & Francis 3 publications, 1.21%
Annual Reviews	Annual Reviews, 3, 1.21% Annual Reviews 3 publications, 1.21%
Public Library of Science (PLoS)	Public Library of Science (PLoS), 2, 0.81% Public Library of Science (PLoS) 2 publications, 0.81%
Cambridge University Press	Cambridge University Press, 2, 0.81% Cambridge University Press 2 publications, 0.81%
American Society for Microbiology	American Society for Microbiology, 2, 0.81% American Society for Microbiology 2 publications, 0.81%
International Union of Crystallography (IUCr)	International Union of Crystallography (IUCr), 2, 0.81% International Union of Crystallography (IUCr) 2 publications, 0.81%
Mary Ann Liebert	Mary Ann Liebert, 1, 0.4% Mary Ann Liebert 1 publication, 0.4%
Portland Press	Portland Press, 1, 0.4% Portland Press 1 publication, 0.4%
Frontiers Media S.A.	Frontiers Media S.A., 1, 0.4% Frontiers Media S.A. 1 publication, 0.4%
Royal Society of Chemistry (RSC)	Royal Society of Chemistry (RSC), 1, 0.4% Royal Society of Chemistry (RSC) 1 publication, 0.4%
American Society for Cell Biology (ASCB)	American Society for Cell Biology (ASCB), 1, 0.4% American Society for Cell Biology (ASCB) 1 publication, 0.4%
	10 20 30 40 50 60 70 80 90

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GOST |

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GOST Copy

Gao H. et al. Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement // Cell. 2003. Vol. 113. No. 6. pp. 789-801.

GOST all authors (up to 50) Copy

Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S. M., VAN ROEY P., Agrawal R. K., Harvey S. B., Sali A., Chapman M. W., Frank J. L. Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement // Cell. 2003. Vol. 113. No. 6. pp. 789-801.

RIS |

Cite this

RIS Copy

TY - JOUR

DO - 10.1016/S0092-8674(03)00427-6

UR - https://doi.org/10.1016%2FS0092-8674%2803%2900427-6

TI - Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement

T2 - Cell

AU - Gao, Haixiao

AU - Sengupta, Jayati

AU - Valle, Mikel

AU - Korostelev, Andrei

AU - Eswar, Narayanan

AU - Stagg, Scott M.

AU - VAN ROEY, Patrick

AU - Agrawal, Rajendra K.

AU - Harvey, Stephen B.

AU - Sali, Andrej

AU - Chapman, Michael W.

AU - Frank, Joseph L.

PY - 2003

DA - 2003/06/01 00:00:00

PB - Elsevier

SP - 789-801

IS - 6

VL - 113

SN - 0092-8674

SN - 1097-4172

ER -

BibTex |

Cite this

BibTex Copy

@article{2003_Gao,

author = {Haixiao Gao and Jayati Sengupta and Mikel Valle and Andrei Korostelev and Narayanan Eswar and Scott M. Stagg and Patrick VAN ROEY and Rajendra K. Agrawal and Stephen B. Harvey and Andrej Sali and Michael W. Chapman and Joseph L. Frank},

title = {Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement},

journal = {Cell},

year = {2003},

volume = {113},

publisher = {Elsevier},

month = {jun},

url = {https://doi.org/10.1016%2FS0092-8674%2803%2900427-6},

number = {6},

pages = {789--801},

doi = {10.1016/S0092-8674(03)00427-6}

}

MLA

Cite this

MLA Copy

Gao, Haixiao, et al. “Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement.” Cell, vol. 113, no. 6, Jun. 2003, pp. 789-801. https://doi.org/10.1016%2FS0092-8674%2803%2900427-6.

Found error?

Publisher

Elsevier

Journal

Cell

Quartile SCImago

Quartile WOS

Impact factor

64.5

ISSN

00928674 (Print)
10974172 (Electronic)

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