Open Access
Open access
Molecular Cell, volume 58, issue 5, pages 832-844

Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A

Polikanov Yury S 1, 2
Starosta Agata L 3
Juette Manuel F 4
Altman Roger B 4
Terry Daniel S 4
Lu Wanli 5
Burnett Benjamin J 4
Dinos George P. 6
Reynolds Kevin R. 5
Steitz Thomas A. 1, 8
2
 
Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.
3
 
Gene Center and Department for Biochemistry, University of Munich, Feodor-Lynenstr. 25, 81377 Munich, Germany
5
 
Department of Chemistry, Portland State University, Portland, OR 97207 USA
6
 
Department of Biochemistry, School of Medicine, University of Patras, 26500, Patras, Greece
8
 
Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA
9
 
Center for integrated Protein Science Munich (CiPSM), University of Munich, Feodor-Lynenstr. 25, 81377 Munich, Germany
Publication typeJournal Article
Publication date2015-06-01
Journal: Molecular Cell
Quartile SCImago
Q1
Quartile WOS
Q1
Impact factor16
ISSN10972765, 10974164
Molecular Biology
Cell Biology
Abstract
The increase in multi-drug-resistant bacteria is limiting the effectiveness of currently approved antibiotics, leading to a renewed interest in antibiotics with distinct chemical scaffolds. We have solved the structures of the Thermus thermophilus 70S ribosome with A-, P-, and E-site tRNAs bound and in complex with either the aminocyclitol-containing antibiotic hygromycin A (HygA) or the nucleoside antibiotic A201A. Both antibiotics bind at the peptidyl transferase center and sterically occlude the CCA-end of the A-tRNA from entering the A site of the peptidyl transferase center. Single-molecule Förster resonance energy transfer (smFRET) experiments reveal that HygA and A201A specifically interfere with full accommodation of the A-tRNA, leading to the presence of tRNA accommodation intermediates and thereby inhibiting peptide bond formation. Thus, our results provide not only insight into the mechanism of action of HygA and A201A, but also into the fundamental process of tRNA accommodation during protein synthesis.

Citations by journals

1
2
3
4
5
6
7
8
9
Nucleic Acids Research
Nucleic Acids Research, 9, 11.54%
Nucleic Acids Research
9 publications, 11.54%
Nature Communications
Nature Communications, 8, 10.26%
Nature Communications
8 publications, 10.26%
Nature Chemical Biology
Nature Chemical Biology, 5, 6.41%
Nature Chemical Biology
5 publications, 6.41%
Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, 4, 5.13%
Proceedings of the National Academy of Sciences of the United States of America
4 publications, 5.13%
International Journal of Molecular Sciences
International Journal of Molecular Sciences, 2, 2.56%
International Journal of Molecular Sciences
2 publications, 2.56%
Nature
Nature, 2, 2.56%
Nature
2 publications, 2.56%
Molecular Cell
Molecular Cell, 2, 2.56%
Molecular Cell
2 publications, 2.56%
Angewandte Chemie
Angewandte Chemie, 2, 2.56%
Angewandte Chemie
2 publications, 2.56%
Angewandte Chemie - International Edition
Angewandte Chemie - International Edition, 2, 2.56%
Angewandte Chemie - International Edition
2 publications, 2.56%
Journal of the American Chemical Society
Journal of the American Chemical Society, 2, 2.56%
Journal of the American Chemical Society
2 publications, 2.56%
Antimicrobial Agents and Chemotherapy
Antimicrobial Agents and Chemotherapy, 2, 2.56%
Antimicrobial Agents and Chemotherapy
2 publications, 2.56%
Journal of Chemical Physics
Journal of Chemical Physics, 1, 1.28%
Journal of Chemical Physics
1 publication, 1.28%
Philosophical Transactions of the Royal Society B: Biological Sciences
Philosophical Transactions of the Royal Society B: Biological Sciences, 1, 1.28%
Philosophical Transactions of the Royal Society B: Biological Sciences
1 publication, 1.28%
Microorganisms
Microorganisms, 1, 1.28%
Microorganisms
1 publication, 1.28%
Journal of Antibiotics
Journal of Antibiotics, 1, 1.28%
Journal of Antibiotics
1 publication, 1.28%
World Journal of Microbiology and Biotechnology
World Journal of Microbiology and Biotechnology, 1, 1.28%
World Journal of Microbiology and Biotechnology
1 publication, 1.28%
Nature Microbiology
Nature Microbiology, 1, 1.28%
Nature Microbiology
1 publication, 1.28%
Biophysical Journal
Biophysical Journal, 1, 1.28%
Biophysical Journal
1 publication, 1.28%
Biotechnology Advances
Biotechnology Advances, 1, 1.28%
Biotechnology Advances
1 publication, 1.28%
Cell Host and Microbe
Cell Host and Microbe, 1, 1.28%
Cell Host and Microbe
1 publication, 1.28%
Cell
Cell, 1, 1.28%
Cell
1 publication, 1.28%
Research in Microbiology
Research in Microbiology, 1, 1.28%
Research in Microbiology
1 publication, 1.28%
Microbiology spectrum
Microbiology spectrum, 1, 1.28%
Microbiology spectrum
1 publication, 1.28%
BioEssays
BioEssays, 1, 1.28%
BioEssays
1 publication, 1.28%
Medicinal Research Reviews
Medicinal Research Reviews, 1, 1.28%
Medicinal Research Reviews
1 publication, 1.28%
Journal of Physical Chemistry B
Journal of Physical Chemistry B, 1, 1.28%
Journal of Physical Chemistry B
1 publication, 1.28%
Journal of Medicinal Chemistry
Journal of Medicinal Chemistry, 1, 1.28%
Journal of Medicinal Chemistry
1 publication, 1.28%
Organic and Biomolecular Chemistry
Organic and Biomolecular Chemistry, 1, 1.28%
Organic and Biomolecular Chemistry
1 publication, 1.28%
Biochemistry (Moscow)
Biochemistry (Moscow), 1, 1.28%
Biochemistry (Moscow)
1 publication, 1.28%
1
2
3
4
5
6
7
8
9

Citations by publishers

2
4
6
8
10
12
14
16
18
Springer Nature
Springer Nature, 18, 23.08%
Springer Nature
18 publications, 23.08%
Oxford University Press
Oxford University Press, 9, 11.54%
Oxford University Press
9 publications, 11.54%
Elsevier
Elsevier, 7, 8.97%
Elsevier
7 publications, 8.97%
Wiley
Wiley, 6, 7.69%
Wiley
6 publications, 7.69%
American Chemical Society (ACS)
American Chemical Society (ACS), 4, 5.13%
American Chemical Society (ACS)
4 publications, 5.13%
Proceedings of the National Academy of Sciences (PNAS)
Proceedings of the National Academy of Sciences (PNAS), 4, 5.13%
Proceedings of the National Academy of Sciences (PNAS)
4 publications, 5.13%
Multidisciplinary Digital Publishing Institute (MDPI)
Multidisciplinary Digital Publishing Institute (MDPI), 3, 3.85%
Multidisciplinary Digital Publishing Institute (MDPI)
3 publications, 3.85%
American Society for Microbiology
American Society for Microbiology, 3, 3.85%
American Society for Microbiology
3 publications, 3.85%
Annual Reviews
Annual Reviews, 2, 2.56%
Annual Reviews
2 publications, 2.56%
American Institute of Physics (AIP)
American Institute of Physics (AIP), 1, 1.28%
American Institute of Physics (AIP)
1 publication, 1.28%
The Royal Society
The Royal Society, 1, 1.28%
The Royal Society
1 publication, 1.28%
Biophysical Society
Biophysical Society, 1, 1.28%
Biophysical Society
1 publication, 1.28%
Royal Society of Chemistry (RSC)
Royal Society of Chemistry (RSC), 1, 1.28%
Royal Society of Chemistry (RSC)
1 publication, 1.28%
Pleiades Publishing
Pleiades Publishing, 1, 1.28%
Pleiades Publishing
1 publication, 1.28%
Taylor & Francis
Taylor & Francis, 1, 1.28%
Taylor & Francis
1 publication, 1.28%
eLife Sciences Publications
eLife Sciences Publications, 1, 1.28%
eLife Sciences Publications
1 publication, 1.28%
Cold Spring Harbor Laboratory
Cold Spring Harbor Laboratory, 1, 1.28%
Cold Spring Harbor Laboratory
1 publication, 1.28%
2
4
6
8
10
12
14
16
18
  • We do not take into account publications that without a DOI.
  • Statistics recalculated only for publications connected to researchers, organizations and labs registered on the platform.
  • Statistics recalculated weekly.
Metrics
Share
Cite this
GOST |
Cite this
GOST Copy
Polikanov Y. S. et al. Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A // Molecular Cell. 2015. Vol. 58. No. 5. pp. 832-844.
GOST all authors (up to 50) Copy
Polikanov Y. S., Starosta A. L., Juette M. F., Altman R. B., Terry D. S., Lu W., Burnett B. J., Dinos G. P., Reynolds K. R., Blanchard S., Steitz T. A., Wilson D. W. Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A // Molecular Cell. 2015. Vol. 58. No. 5. pp. 832-844.
RIS |
Cite this
RIS Copy
TY - JOUR
DO - 10.1016/j.molcel.2015.04.014
UR - https://doi.org/10.1016%2Fj.molcel.2015.04.014
TI - Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A
T2 - Molecular Cell
AU - Polikanov, Yury S
AU - Starosta, Agata L
AU - Juette, Manuel F
AU - Altman, Roger B
AU - Terry, Daniel S
AU - Lu, Wanli
AU - Burnett, Benjamin J
AU - Dinos, George P.
AU - Reynolds, Kevin R.
AU - Blanchard, Scott
AU - Steitz, Thomas A.
AU - Wilson, Daniel W.
PY - 2015
DA - 2015/06/01 00:00:00
PB - Elsevier
SP - 832-844
IS - 5
VL - 58
PMID - 26028538
SN - 1097-2765
SN - 1097-4164
ER -
BibTex |
Cite this
BibTex Copy
@article{2015_Polikanov,
author = {Yury S Polikanov and Agata L Starosta and Manuel F Juette and Roger B Altman and Daniel S Terry and Wanli Lu and Benjamin J Burnett and George P. Dinos and Kevin R. Reynolds and Scott Blanchard and Thomas A. Steitz and Daniel W. Wilson},
title = {Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A},
journal = {Molecular Cell},
year = {2015},
volume = {58},
publisher = {Elsevier},
month = {jun},
url = {https://doi.org/10.1016%2Fj.molcel.2015.04.014},
number = {5},
pages = {832--844},
doi = {10.1016/j.molcel.2015.04.014}
}
MLA
Cite this
MLA Copy
Polikanov, Yury S., et al. “Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A.” Molecular Cell, vol. 58, no. 5, Jun. 2015, pp. 832-844. https://doi.org/10.1016%2Fj.molcel.2015.04.014.
Found error?