Open Access
Studies in Mycology, volume 81, issue 1, pages 85-147
Towards an integrated phylogenetic classification of the Tremellomycetes
Publication type: Journal Article
Publication date: 2015-06-01
PubMed ID:
26955199
Agricultural and Biological Sciences (miscellaneous)
Abstract
Families and genera assigned to Tremellomycetes have been mainly circumscribed by morphology and for the yeasts also by biochemical and physiological characteristics. This phenotype-based classification is largely in conflict with molecular phylogenetic analyses. Here a phylogenetic classification framework for the Tremellomycetes is proposed based on the results of phylogenetic analyses from a seven-genes dataset covering the majority of tremellomycetous yeasts and closely related filamentous taxa. Circumscriptions of the taxonomic units at the order, family and genus levels recognised were quantitatively assessed using the phylogenetic rank boundary optimisation (PRBO) and modified general mixed Yule coalescent (GMYC) tests. In addition, a comprehensive phylogenetic analysis on an expanded LSU rRNA (D1/D2 domains) gene sequence dataset covering as many as available teleomorphic and filamentous taxa within Tremellomycetes was performed to investigate the relationships between yeasts and filamentous taxa and to examine the stability of undersampled clades. Based on the results inferred from molecular data and morphological and physiochemical features, we propose an updated classification for the Tremellomycetes. We accept five orders, 17 families and 54 genera, including seven new families and 18 new genera. In addition, seven families and 17 genera are emended and one new species name and 185 new combinations are proposed. We propose to use the term pro tempore or pro tem. in abbreviation to indicate the species names that are temporarily maintained.
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LIU X. Z. et al. Towards an integrated phylogenetic classification of the Tremellomycetes // Studies in Mycology. 2015. Vol. 81. No. 1. pp. 85-147.
GOST all authors (up to 50)
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LIU X. Z., Wang Q. M., Göker M., Groenewald M., Kachalkin A. V., Lumbsch H. T., Millanes A., Wedin M., Yurkov A. M., Boekhout T., Bai F. Y. Towards an integrated phylogenetic classification of the Tremellomycetes // Studies in Mycology. 2015. Vol. 81. No. 1. pp. 85-147.
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TY - JOUR
DO - 10.1016/j.simyco.2015.12.001
UR - https://doi.org/10.1016%2Fj.simyco.2015.12.001
TI - Towards an integrated phylogenetic classification of the Tremellomycetes
T2 - Studies in Mycology
AU - LIU, X. Z.
AU - Wang, Q. M.
AU - Göker, M
AU - Groenewald, M
AU - Kachalkin, A. V.
AU - Lumbsch, H. T.
AU - Millanes, A.M.
AU - Wedin, M.
AU - Yurkov, A. M.
AU - Boekhout, T
AU - Bai, F. Y.
PY - 2015
DA - 2015/06/01 00:00:00
PB - Westerdijk Fungal Biodiversity Institute
SP - 85-147
IS - 1
VL - 81
PMID - 26955199
SN - 0166-0616
ER -
Cite this
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@article{2015_LIU,
author = {X. Z. LIU and Q. M. Wang and M Göker and M Groenewald and A. V. Kachalkin and H. T. Lumbsch and A.M. Millanes and M. Wedin and A. M. Yurkov and T Boekhout and F. Y. Bai},
title = {Towards an integrated phylogenetic classification of the Tremellomycetes},
journal = {Studies in Mycology},
year = {2015},
volume = {81},
publisher = {Westerdijk Fungal Biodiversity Institute},
month = {jun},
url = {https://doi.org/10.1016%2Fj.simyco.2015.12.001},
number = {1},
pages = {85--147},
doi = {10.1016/j.simyco.2015.12.001}
}
Cite this
MLA
Copy
LIU, X. Z., et al. “Towards an integrated phylogenetic classification of the Tremellomycetes.” Studies in Mycology, vol. 81, no. 1, Jun. 2015, pp. 85-147. https://doi.org/10.1016%2Fj.simyco.2015.12.001.