Open Access

Nature Nanotechnology, volume 4, issue 4, pages 249-254

Enzyme cascades activated on topologically programmed DNA scaffolds

Wilner Ofer I ¹

Weizmann Yossi ¹

Gill Ron ¹

Lioubashevski Oleg ¹

Freeman Ronit ¹

Willner Itamar ¹

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Institute of Chemistry and The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem, Jerusalem, Israel |

Publication type: Journal Article

Publication date: 2009-03-29

Springer Nature

Journal: Nature Nanotechnology

Quartile SCImago

Quartile WOS

Impact factor: 38.3

ISSN: 17483387, 17483395

DOI: 10.1038/nnano.2009.50

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Atomic and Molecular Physics, and Optics

Condensed Matter Physics

General Materials Science

Electrical and Electronic Engineering

Bioengineering

Biomedical Engineering

Abstract

The ability of DNA to self-assemble into one-, two- and three-dimensional nanostructures, combined with the precision that is now possible when positioning nanoparticles or proteins on DNA scaffolds, provide a promising approach for the self-organization of composite nanostructures. Predicting and controlling the functions that emerge in self-organized biomolecular nanostructures is a major challenge in systems biology, and although a number of innovative examples have been reported, the emergent properties of systems in which enzymes are coupled together have not been fully explored. Here, we report the self-assembly of a DNA scaffold made of DNA strips that include 'hinges' to which biomolecules can be tethered. We attach either two enzymes or a cofactor-enzyme pair to the scaffold, and show that enzyme cascades or cofactor-mediated biocatalysis can proceed effectively; similar processes are not observed in diffusion-controlled homogeneous mixtures of the same components. Furthermore, because the relative position of the two enzymes or the cofactor-enzyme pair is determined by the topology of the DNA scaffold, it is possible to control the reactivity of the system through the design of the individual DNA strips. This method could lead to the self-organization of complex multi-enzyme cascades.

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Citations by journals

	5 10 15 20 25 30 35
Angewandte Chemie	Angewandte Chemie, 34, 5.57% Angewandte Chemie 34 publications, 5.57%
Angewandte Chemie - International Edition	Angewandte Chemie - International Edition, 33, 5.41% Angewandte Chemie - International Edition 33 publications, 5.41%
Chemical Communications	Chemical Communications, 26, 4.26% Chemical Communications 26 publications, 4.26%
Journal of the American Chemical Society	Journal of the American Chemical Society, 21, 3.44% Journal of the American Chemical Society 21 publications, 3.44%
ACS Nano	ACS Nano, 19, 3.11% ACS Nano 19 publications, 3.11%
ChemBioChem	ChemBioChem, 17, 2.79% ChemBioChem 17 publications, 2.79%
Analytical Chemistry	Analytical Chemistry, 16, 2.62% Analytical Chemistry 16 publications, 2.62%
ACS Catalysis	ACS Catalysis, 15, 2.46% ACS Catalysis 15 publications, 2.46%
Nanoscale	Nanoscale, 15, 2.46% Nanoscale 15 publications, 2.46%
Nature Communications	Nature Communications, 14, 2.3% Nature Communications 14 publications, 2.3%
Small	Small, 14, 2.3% Small 14 publications, 2.3%
ACS applied materials & interfaces	ACS applied materials & interfaces, 13, 2.13% ACS applied materials & interfaces 13 publications, 2.13%
Nature Nanotechnology	Nature Nanotechnology, 11, 1.8% Nature Nanotechnology 11 publications, 1.8%
Nano Letters	Nano Letters, 11, 1.8% Nano Letters 11 publications, 1.8%
Current Opinion in Biotechnology	Current Opinion in Biotechnology, 10, 1.64% Current Opinion in Biotechnology 10 publications, 1.64%
Chemistry - A European Journal	Chemistry - A European Journal, 10, 1.64% Chemistry - A European Journal 10 publications, 1.64%
Langmuir	Langmuir, 10, 1.64% Langmuir 10 publications, 1.64%
Chemical Society Reviews	Chemical Society Reviews, 10, 1.64% Chemical Society Reviews 10 publications, 1.64%
Chemical Science	Chemical Science, 10, 1.64% Chemical Science 10 publications, 1.64%
Bioconjugate Chemistry	Bioconjugate Chemistry, 8, 1.31% Bioconjugate Chemistry 8 publications, 1.31%
Accounts of Chemical Research	Accounts of Chemical Research, 8, 1.31% Accounts of Chemical Research 8 publications, 1.31%
Chemical Reviews	Chemical Reviews, 7, 1.15% Chemical Reviews 7 publications, 1.15%
Advanced Functional Materials	Advanced Functional Materials, 6, 0.98% Advanced Functional Materials 6 publications, 0.98%
Trends in Biotechnology	Trends in Biotechnology, 5, 0.82% Trends in Biotechnology 5 publications, 0.82%
Chemical Engineering Journal	Chemical Engineering Journal, 5, 0.82% Chemical Engineering Journal 5 publications, 0.82%
RSC Advances	RSC Advances, 5, 0.82% RSC Advances 5 publications, 0.82%
Methods in Molecular Biology	Methods in Molecular Biology, 5, 0.82% Methods in Molecular Biology 5 publications, 0.82%
Molecules	Molecules, 4, 0.66% Molecules 4 publications, 0.66%
Frontiers in Bioengineering and Biotechnology	Frontiers in Bioengineering and Biotechnology, 4, 0.66% Frontiers in Bioengineering and Biotechnology 4 publications, 0.66%
	5 10 15 20 25 30 35

Citations by publishers

	20 40 60 80 100 120 140 160
American Chemical Society (ACS)	American Chemical Society (ACS), 149, 24.43% American Chemical Society (ACS) 149 publications, 24.43%
Wiley	Wiley, 141, 23.11% Wiley 141 publications, 23.11%
Royal Society of Chemistry (RSC)	Royal Society of Chemistry (RSC), 84, 13.77% Royal Society of Chemistry (RSC) 84 publications, 13.77%
Springer Nature	Springer Nature, 77, 12.62% Springer Nature 77 publications, 12.62%
Elsevier	Elsevier, 64, 10.49% Elsevier 64 publications, 10.49%
Multidisciplinary Digital Publishing Institute (MDPI)	Multidisciplinary Digital Publishing Institute (MDPI), 12, 1.97% Multidisciplinary Digital Publishing Institute (MDPI) 12 publications, 1.97%
Frontiers Media S.A.	Frontiers Media S.A., 6, 0.98% Frontiers Media S.A. 6 publications, 0.98%
Taylor & Francis	Taylor & Francis, 6, 0.98% Taylor & Francis 6 publications, 0.98%
IOP Publishing	IOP Publishing, 5, 0.82% IOP Publishing 5 publications, 0.82%
American Association for the Advancement of Science (AAAS)	American Association for the Advancement of Science (AAAS), 4, 0.66% American Association for the Advancement of Science (AAAS) 4 publications, 0.66%
Annual Reviews	Annual Reviews, 3, 0.49% Annual Reviews 3 publications, 0.49%
Beilstein-Institut	Beilstein-Institut, 2, 0.33% Beilstein-Institut 2 publications, 0.33%
American Institute of Physics (AIP)	American Institute of Physics (AIP), 2, 0.33% American Institute of Physics (AIP) 2 publications, 0.33%
Portland Press	Portland Press, 2, 0.33% Portland Press 2 publications, 0.33%
The Royal Society	The Royal Society, 2, 0.33% The Royal Society 2 publications, 0.33%
The Electrochemical Society	The Electrochemical Society, 2, 0.33% The Electrochemical Society 2 publications, 0.33%
Chemical Industry Press	Chemical Industry Press, 2, 0.33% Chemical Industry Press 2 publications, 0.33%
Oxford University Press	Oxford University Press, 2, 0.33% Oxford University Press 2 publications, 0.33%
Pleiades Publishing	Pleiades Publishing, 1, 0.16% Pleiades Publishing 1 publication, 0.16%
American Physical Society (APS)	American Physical Society (APS), 1, 0.16% American Physical Society (APS) 1 publication, 0.16%
The Chemical Society of Japan	The Chemical Society of Japan, 1, 0.16% The Chemical Society of Japan 1 publication, 0.16%
Cambridge University Press	Cambridge University Press, 1, 0.16% Cambridge University Press 1 publication, 0.16%
Public Library of Science (PLoS)	Public Library of Science (PLoS), 1, 0.16% Public Library of Science (PLoS) 1 publication, 0.16%
Biophysical Society	Biophysical Society, 1, 0.16% Biophysical Society 1 publication, 0.16%
American Society for Microbiology	American Society for Microbiology, 1, 0.16% American Society for Microbiology 1 publication, 0.16%
Hindawi Limited	Hindawi Limited, 1, 0.16% Hindawi Limited 1 publication, 0.16%
Proceedings of the National Academy of Sciences (PNAS)	Proceedings of the National Academy of Sciences (PNAS), 1, 0.16% Proceedings of the National Academy of Sciences (PNAS) 1 publication, 0.16%
Chinese Physical Society	Chinese Physical Society, 1, 0.16% Chinese Physical Society 1 publication, 0.16%
Akademiai Kiado	Akademiai Kiado, 1, 0.16% Akademiai Kiado 1 publication, 0.16%
	20 40 60 80 100 120 140 160

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GOST |

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GOST Copy

Wilner O. I. et al. Enzyme cascades activated on topologically programmed DNA scaffolds // Nature Nanotechnology. 2009. Vol. 4. No. 4. pp. 249-254.

GOST all authors (up to 50) Copy

Wilner O. I., Weizmann Y., Gill R., Lioubashevski O., Freeman R., Willner I. Enzyme cascades activated on topologically programmed DNA scaffolds // Nature Nanotechnology. 2009. Vol. 4. No. 4. pp. 249-254.

RIS |

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RIS Copy

TY - JOUR

DO - 10.1038/nnano.2009.50

UR - https://doi.org/10.1038%2Fnnano.2009.50

TI - Enzyme cascades activated on topologically programmed DNA scaffolds

T2 - Nature Nanotechnology

AU - Wilner, Ofer I

AU - Weizmann, Yossi

AU - Gill, Ron

AU - Lioubashevski, Oleg

AU - Freeman, Ronit

AU - Willner, Itamar

PY - 2009

DA - 2009/03/29 00:00:00

PB - Springer Nature

SP - 249-254

IS - 4

VL - 4

SN - 1748-3387

SN - 1748-3395

ER -

BibTex |

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BibTex Copy

@article{2009_Wilner,

author = {Ofer I Wilner and Yossi Weizmann and Ron Gill and Oleg Lioubashevski and Ronit Freeman and Itamar Willner},

title = {Enzyme cascades activated on topologically programmed DNA scaffolds},

journal = {Nature Nanotechnology},

year = {2009},

volume = {4},

publisher = {Springer Nature},

month = {mar},

url = {https://doi.org/10.1038%2Fnnano.2009.50},

number = {4},

pages = {249--254},

doi = {10.1038/nnano.2009.50}

}

MLA

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MLA Copy

Wilner, Ofer I., et al. “Enzyme cascades activated on topologically programmed DNA scaffolds.” Nature Nanotechnology, vol. 4, no. 4, Mar. 2009, pp. 249-254. https://doi.org/10.1038%2Fnnano.2009.50.

Found error?

Publisher

Springer Nature

Journal

Nature Nanotechnology

Quartile SCImago

Quartile WOS

Impact factor

38.3

ISSN

17483387 (Print)
17483395 (Electronic)