Nature Reviews Microbiology, volume 13, issue 5, pages 285-297

Mechanisms of ribosome rescue in bacteria

Keiler Kenneth C ¹

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Department of Biochemistry and Molecular Biology, 401 Althouse Laboratory, Pennsylvania State University, USA |

Publication type: Journal Article

Publication date: 2015-04-13

Springer Nature

Journal: Nature Reviews Microbiology

Quartile SCImago

Quartile WOS

Impact factor: 88.1

ISSN: 17401526, 17401534

DOI: 10.1038/nrmicro3438

Copy DOI

Microbiology

Infectious Diseases

General Immunology and Microbiology

Abstract

In bacteria, ribosome stalling is a frequent event that threatens viability. In this Review, Kenneth Keiler discusses the triggers of ribosome stalling, the physiological consequences of stalling and the mechanisms used by bacteria to rescue stalled ribosomes, includingtrans-translation and the alternative pathways mediated by alternative ribosome-rescue factor A (ArfA) and ArfB. Ribosomes that stall during translation need to be rescued to ensure that the protein synthesis capacity of the cell is maintained. Stalling arises when ribosomes become trapped at the 3′ end of an mRNA, which occurs when a codon is unavailable, as this leads to the arrest of elongation or termination. In addition, various factors can induce ribosome stalling in the middle of an mRNA, including the presence of specific amino acid sequence motifs in the nascent polypeptide. Almost all bacteria use a mechanism known as trans-translation to rescue stalled ribosomes, and some species also have other rescue mechanisms that are mediated either by the alternative ribosome-rescue factor A (ArfA) or ArfB. In this Review, I summarize the recent studies that have demonstrated the conditions that trigger ribosome stalling, the pathways that bacteria use to rescue stalled ribosomes and the physiological effects of these processes.

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Proceedings of the National Academy of Sciences of the United States of America	Proceedings of the National Academy of Sciences of the United States of America, 6, 3.66% Proceedings of the National Academy of Sciences of the United States of America 6 publications, 3.66%
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Citations by publishers

	5 10 15 20 25
Springer Nature	Springer Nature, 24, 14.63% Springer Nature 24 publications, 14.63%
Elsevier	Elsevier, 15, 9.15% Elsevier 15 publications, 9.15%
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Oxford University Press	Oxford University Press, 10, 6.1% Oxford University Press 10 publications, 6.1%
Frontiers Media S.A.	Frontiers Media S.A., 9, 5.49% Frontiers Media S.A. 9 publications, 5.49%
eLife Sciences Publications	eLife Sciences Publications, 9, 5.49% eLife Sciences Publications 9 publications, 5.49%
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Wiley	Wiley, 6, 3.66% Wiley 6 publications, 3.66%
Proceedings of the National Academy of Sciences (PNAS)	Proceedings of the National Academy of Sciences (PNAS), 6, 3.66% Proceedings of the National Academy of Sciences (PNAS) 6 publications, 3.66%
Pleiades Publishing	Pleiades Publishing, 5, 3.05% Pleiades Publishing 5 publications, 3.05%
American Chemical Society (ACS)	American Chemical Society (ACS), 5, 3.05% American Chemical Society (ACS) 5 publications, 3.05%
Annual Reviews	Annual Reviews, 4, 2.44% Annual Reviews 4 publications, 2.44%
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EMBO press	EMBO press, 3, 1.83% EMBO press 3 publications, 1.83%
Taylor & Francis	Taylor & Francis, 3, 1.83% Taylor & Francis 3 publications, 1.83%
American Association for the Advancement of Science (AAAS)	American Association for the Advancement of Science (AAAS), 3, 1.83% American Association for the Advancement of Science (AAAS) 3 publications, 1.83%
American Society for Biochemistry and Molecular Biology	American Society for Biochemistry and Molecular Biology, 2, 1.22% American Society for Biochemistry and Molecular Biology 2 publications, 1.22%
Royal Society of Chemistry (RSC)	Royal Society of Chemistry (RSC), 2, 1.22% Royal Society of Chemistry (RSC) 2 publications, 1.22%
Walter de Gruyter	Walter de Gruyter, 2, 1.22% Walter de Gruyter 2 publications, 1.22%
Rockefeller University Press	Rockefeller University Press, 2, 1.22% Rockefeller University Press 2 publications, 1.22%
American Physical Society (APS)	American Physical Society (APS), 1, 0.61% American Physical Society (APS) 1 publication, 0.61%
Centers for Disease Control and Prevention (CDC)	Centers for Disease Control and Prevention (CDC), 1, 0.61% Centers for Disease Control and Prevention (CDC) 1 publication, 0.61%
The Company of Biologists	The Company of Biologists, 1, 0.61% The Company of Biologists 1 publication, 0.61%
Microbiology Society	Microbiology Society, 1, 0.61% Microbiology Society 1 publication, 0.61%
The Royal Society	The Royal Society, 1, 0.61% The Royal Society 1 publication, 0.61%
Cold Spring Harbor Laboratory	Cold Spring Harbor Laboratory, 1, 0.61% Cold Spring Harbor Laboratory 1 publication, 0.61%
IOP Publishing	IOP Publishing, 1, 0.61% IOP Publishing 1 publication, 0.61%
	5 10 15 20 25

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Keiler K. C. Mechanisms of ribosome rescue in bacteria // Nature Reviews Microbiology. 2015. Vol. 13. No. 5. pp. 285-297.

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Keiler K. C. Mechanisms of ribosome rescue in bacteria // Nature Reviews Microbiology. 2015. Vol. 13. No. 5. pp. 285-297.

RIS |

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RIS Copy

TY - JOUR

DO - 10.1038/nrmicro3438

UR - https://doi.org/10.1038%2Fnrmicro3438

TI - Mechanisms of ribosome rescue in bacteria

T2 - Nature Reviews Microbiology

AU - Keiler, Kenneth C

PY - 2015

DA - 2015/04/13 00:00:00

PB - Springer Nature

SP - 285-297

IS - 5

VL - 13

SN - 1740-1526

SN - 1740-1534

ER -

BibTex |

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BibTex Copy

@article{2015_Keiler,

author = {Kenneth C Keiler},

title = {Mechanisms of ribosome rescue in bacteria},

journal = {Nature Reviews Microbiology},

year = {2015},

volume = {13},

publisher = {Springer Nature},

month = {apr},

url = {https://doi.org/10.1038%2Fnrmicro3438},

number = {5},

pages = {285--297},

doi = {10.1038/nrmicro3438}

}

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Keiler, Kenneth C.. “Mechanisms of ribosome rescue in bacteria.” Nature Reviews Microbiology, vol. 13, no. 5, Apr. 2015, pp. 285-297. https://doi.org/10.1038%2Fnrmicro3438.

Found error?

Publisher

Springer Nature

Journal

Nature Reviews Microbiology

Quartile SCImago

Quartile WOS

Impact factor

88.1

ISSN

17401526 (Print)
17401534 (Electronic)