Open Access
Genetics, volume 206, issue 2, pages 717-750
Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina)
1
Department Genomes and Genetics, Institut Pasteur, Centre National de la Recherche Scientifique UMR3525, 75724-CEDEX15 Paris, France
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3
Centre for Genetic Architecture of Complex Traits, University of Leicester, LE1 7RH, United Kingdom
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4
Department of Genetics, University of Leicester, LE1 7RH, United Kingdom
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Publication type: Journal Article
Publication date: 2017-06-01
PubMed ID:
28592505
Genetics
Abstract
Considerable progress in our understanding of yeast genomes and their evolution has been made over the last decade with the sequencing, analysis, and comparisons of numerous species, strains, or isolates of diverse origins. The role played by yeasts in natural environments as well as in artificial manufactures, combined with the importance of some species as model experimental systems sustained this effort. At the same time, their enormous evolutionary diversity (there are yeast species in every subphylum of Dikarya) sparked curiosity but necessitated further efforts to obtain appropriate reference genomes. Today, yeast genomes have been very informative about basic mechanisms of evolution, speciation, hybridization, domestication, as well as about the molecular machineries underlying them. They are also irreplaceable to investigate in detail the complex relationship between genotypes and phenotypes with both theoretical and practical implications. This review examines these questions at two distinct levels offered by the broad evolutionary range of yeasts: inside the best-studied Saccharomyces species complex, and across the entire and diversified subphylum of Saccharomycotina. While obviously revealing evolutionary histories at different scales, data converge to a remarkably coherent picture in which one can estimate the relative importance of intrinsic genome dynamics, including gene birth and loss, vs. horizontal genetic accidents in the making of populations. The facility with which novel yeast genomes can now be studied, combined with the already numerous available reference genomes, offer privileged perspectives to further examine these fundamental biological questions using yeasts both as eukaryotic models and as fungi of practical importance.
Citations by journals
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FEMS Yeast Research
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FEMS Yeast Research
7 publications, 7.53%
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Scientific Reports
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Scientific Reports
4 publications, 4.3%
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Genes
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Genes
4 publications, 4.3%
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PLoS Genetics
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PLoS Genetics
4 publications, 4.3%
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Yeast
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Yeast
4 publications, 4.3%
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Current Genetics
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Current Genetics
3 publications, 3.23%
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Biological Reviews
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Biological Reviews
3 publications, 3.23%
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mSphere
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mSphere
3 publications, 3.23%
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Frontiers in Microbiology
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Frontiers in Microbiology
2 publications, 2.15%
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PLoS ONE
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PLoS ONE
2 publications, 2.15%
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Cell
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Cell
2 publications, 2.15%
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G3: Genes, Genomes, Genetics
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G3: Genes, Genomes, Genetics
2 publications, 2.15%
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Proceedings of the National Academy of Sciences of the United States of America
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Proceedings of the National Academy of Sciences of the United States of America
2 publications, 2.15%
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Animal Microbiome
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Animal Microbiome
1 publication, 1.08%
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International Journal of Molecular Sciences
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International Journal of Molecular Sciences
1 publication, 1.08%
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Microorganisms
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Microorganisms
1 publication, 1.08%
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Frontiers in Genetics
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Frontiers in Genetics
1 publication, 1.08%
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Frontiers in Cell and Developmental Biology
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Frontiers in Cell and Developmental Biology
1 publication, 1.08%
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Biomolecules
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Biomolecules
1 publication, 1.08%
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Nature Reviews Microbiology
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Nature Reviews Microbiology
1 publication, 1.08%
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Applied Microbiology and Biotechnology
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Applied Microbiology and Biotechnology
1 publication, 1.08%
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Fungal Diversity
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Fungal Diversity
1 publication, 1.08%
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Communications Biology
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Communications Biology
1 publication, 1.08%
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Food Microbiology
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Food Microbiology
1 publication, 1.08%
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Antonie van Leeuwenhoek
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Antonie van Leeuwenhoek
1 publication, 1.08%
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iScience
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iScience
1 publication, 1.08%
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Fungal Biology Reviews
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Fungal Biology Reviews
1 publication, 1.08%
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Scientia Horticulturae
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Scientia Horticulturae
1 publication, 1.08%
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PLoS Biology
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PLoS Biology
1 publication, 1.08%
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Citations by publishers
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2
4
6
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10
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14
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Springer Nature
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Springer Nature
14 publications, 15.05%
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Elsevier
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Elsevier
11 publications, 11.83%
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Wiley
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Wiley
10 publications, 10.75%
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Multidisciplinary Digital Publishing Institute (MDPI)
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Multidisciplinary Digital Publishing Institute (MDPI)
9 publications, 9.68%
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Oxford University Press
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Oxford University Press
9 publications, 9.68%
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Public Library of Science (PLoS)
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Public Library of Science (PLoS)
7 publications, 7.53%
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American Society for Microbiology
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American Society for Microbiology
5 publications, 5.38%
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Frontiers Media S.A.
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Frontiers Media S.A.
4 publications, 4.3%
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Genetics Society of America
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Genetics Society of America
3 publications, 3.23%
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Proceedings of the National Academy of Sciences (PNAS)
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Proceedings of the National Academy of Sciences (PNAS)
2 publications, 2.15%
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American Chemical Society (ACS)
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American Chemical Society (ACS)
1 publication, 1.08%
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Pleiades Publishing
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Pleiades Publishing
1 publication, 1.08%
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eLife Sciences Publications
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eLife Sciences Publications
1 publication, 1.08%
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Annual Reviews
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Annual Reviews
1 publication, 1.08%
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- We do not take into account publications that without a DOI.
- Statistics recalculated only for publications connected to researchers, organizations and labs registered on the platform.
- Statistics recalculated weekly.
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GOST
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Dujon B. et al. Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina) // Genetics. 2017. Vol. 206. No. 2. pp. 717-750.
GOST all authors (up to 50)
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Dujon B., Louis E. J. Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina) // Genetics. 2017. Vol. 206. No. 2. pp. 717-750.
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RIS
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TY - JOUR
DO - 10.1534/genetics.116.199216
UR - https://doi.org/10.1534%2Fgenetics.116.199216
TI - Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina)
T2 - Genetics
AU - Dujon, Bernard
AU - Louis, Edward J
PY - 2017
DA - 2017/06/01 00:00:00
PB - Genetics Society of America
SP - 717-750
IS - 2
VL - 206
PMID - 28592505
SN - 0016-6731
SN - 1943-2631
ER -
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BibTex
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@article{2017_Dujon,
author = {Bernard Dujon and Edward J Louis},
title = {Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina)},
journal = {Genetics},
year = {2017},
volume = {206},
publisher = {Genetics Society of America},
month = {jun},
url = {https://doi.org/10.1534%2Fgenetics.116.199216},
number = {2},
pages = {717--750},
doi = {10.1534/genetics.116.199216}
}
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MLA
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Dujon, Bernard, et al. “Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina).” Genetics, vol. 206, no. 2, Jun. 2017, pp. 717-750. https://doi.org/10.1534%2Fgenetics.116.199216.