Open Access
Open access
eLife, volume 7

New tools for automated high-resolution cryo-EM structure determination in RELION-3

Zivanov Jasenko 1
Nakane T 1
Forsberg Björn O 2
Kimanius Dari 2
Hagen Wim 3, 4
Lindahl Erik 2, 5
Scheres Sjors H. W. 1
1
 
MRC laboratory of Molecular Biology, Cambridge, United Kingdom
3
 
Structural and computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
4
 
Cryo-Electron Microscopy Service Platform, European Molecular Biology Laboratory, Heidelberg, Germany
Publication typeJournal Article
Publication date2018-11-09
Journal: eLife
Quartile SCImago
Q1
Quartile WOS
Q1
Impact factor7.7
ISSN2050084X
PubMed ID:  30412051
General Biochemistry, Genetics and Molecular Biology
General Medicine
General Immunology and Microbiology
General Neuroscience
Abstract
Here, we describe the third major release of RELION. CPU-based vector acceleration has been added in addition to GPU support, which provides flexibility in use of resources and avoids memory limitations. Reference-free autopicking with Laplacian-of-Gaussian filtering and execution of jobs from python allows non-interactive processing during acquisition, including 2D-classification, de novo model generation and 3D-classification. Per-particle refinement of CTF parameters and correction of estimated beam tilt provides higher resolution reconstructions when particles are at different heights in the ice, and/or coma-free alignment has not been optimal. Ewald sphere curvature correction improves resolution for large particles. We illustrate these developments with publicly available data sets: together with a Bayesian approach to beam-induced motion correction it leads to resolution improvements of 0.2–0.7 Å compared to previous RELION versions.

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Zivanov J. et al. New tools for automated high-resolution cryo-EM structure determination in RELION-3 // eLife. 2018. Vol. 7.
GOST all authors (up to 50) Copy
Zivanov J., Nakane T., Forsberg B. O., Kimanius D., Hagen W., Lindahl E., Scheres S. H. W. New tools for automated high-resolution cryo-EM structure determination in RELION-3 // eLife. 2018. Vol. 7.
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RIS Copy
TY - JOUR
DO - 10.7554/eLife.42166
UR - https://doi.org/10.7554%2FeLife.42166
TI - New tools for automated high-resolution cryo-EM structure determination in RELION-3
T2 - eLife
AU - Zivanov, Jasenko
AU - Nakane, T
AU - Forsberg, Björn O
AU - Kimanius, Dari
AU - Hagen, Wim
AU - Lindahl, Erik
AU - Scheres, Sjors H. W.
PY - 2018
DA - 2018/11/09 00:00:00
PB - eLife Sciences Publications
VL - 7
PMID - 30412051
SN - 2050-084X
ER -
BibTex
Cite this
BibTex Copy
@article{2018_Zivanov,
author = {Jasenko Zivanov and T Nakane and Björn O Forsberg and Dari Kimanius and Wim Hagen and Erik Lindahl and Sjors H. W. Scheres},
title = {New tools for automated high-resolution cryo-EM structure determination in RELION-3},
journal = {eLife},
year = {2018},
volume = {7},
publisher = {eLife Sciences Publications},
month = {nov},
url = {https://doi.org/10.7554%2FeLife.42166},
doi = {10.7554/eLife.42166}
}
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