Open Access
eLife, volume 7
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Zivanov Jasenko
1
,
Nakane T
1
,
Forsberg Björn O
2
,
Kimanius Dari
2
,
Hagen Wim
3, 4
,
Lindahl Erik
2, 5
,
Scheres Sjors H. W.
1
1
MRC laboratory of Molecular Biology, Cambridge, United Kingdom
|
3
Structural and computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
|
4
Cryo-Electron Microscopy Service Platform, European Molecular Biology Laboratory, Heidelberg, Germany
|
Publication type: Journal Article
Publication date: 2018-11-09
PubMed ID:
30412051
General Biochemistry, Genetics and Molecular Biology
General Medicine
General Immunology and Microbiology
General Neuroscience
Abstract
Here, we describe the third major release of RELION. CPU-based vector acceleration has been added in addition to GPU support, which provides flexibility in use of resources and avoids memory limitations. Reference-free autopicking with Laplacian-of-Gaussian filtering and execution of jobs from python allows non-interactive processing during acquisition, including 2D-classification, de novo model generation and 3D-classification. Per-particle refinement of CTF parameters and correction of estimated beam tilt provides higher resolution reconstructions when particles are at different heights in the ice, and/or coma-free alignment has not been optimal. Ewald sphere curvature correction improves resolution for large particles. We illustrate these developments with publicly available data sets: together with a Bayesian approach to beam-induced motion correction it leads to resolution improvements of 0.2–0.7 Å compared to previous RELION versions.
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23 publications, 0.6%
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Springer Nature
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EMBO press
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53 publications, 1.39%
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51 publications, 1.33%
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48 publications, 1.26%
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10 publications, 0.26%
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- We do not take into account publications that without a DOI.
- Statistics recalculated only for publications connected to researchers, organizations and labs registered on the platform.
- Statistics recalculated weekly.
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Zivanov J. et al. New tools for automated high-resolution cryo-EM structure determination in RELION-3 // eLife. 2018. Vol. 7.
GOST all authors (up to 50)
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Zivanov J., Nakane T., Forsberg B. O., Kimanius D., Hagen W., Lindahl E., Scheres S. H. W. New tools for automated high-resolution cryo-EM structure determination in RELION-3 // eLife. 2018. Vol. 7.
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TY - JOUR
DO - 10.7554/eLife.42166
UR - https://doi.org/10.7554%2FeLife.42166
TI - New tools for automated high-resolution cryo-EM structure determination in RELION-3
T2 - eLife
AU - Zivanov, Jasenko
AU - Nakane, T
AU - Forsberg, Björn O
AU - Kimanius, Dari
AU - Hagen, Wim
AU - Lindahl, Erik
AU - Scheres, Sjors H. W.
PY - 2018
DA - 2018/11/09 00:00:00
PB - eLife Sciences Publications
VL - 7
PMID - 30412051
SN - 2050-084X
ER -
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@article{2018_Zivanov,
author = {Jasenko Zivanov and T Nakane and Björn O Forsberg and Dari Kimanius and Wim Hagen and Erik Lindahl and Sjors H. W. Scheres},
title = {New tools for automated high-resolution cryo-EM structure determination in RELION-3},
journal = {eLife},
year = {2018},
volume = {7},
publisher = {eLife Sciences Publications},
month = {nov},
url = {https://doi.org/10.7554%2FeLife.42166},
doi = {10.7554/eLife.42166}
}