volume 18 issue 12 pages 2105673

DiZyme: Open‐Access Expandable Resource for Quantitative Prediction of Nanozyme Catalytic Activity

Publication typeJournal Article
Publication date2022-01-14
scimago Q1
wos Q1
SJR3.301
CiteScore16.1
Impact factor12.1
ISSN16136810, 16136829
General Chemistry
Biotechnology
General Materials Science
Biomaterials
Abstract

Enzymes suffer from high cost, complex purification, and low stability. Development of low‐cost artificial enzymes of comparative or higher effectiveness is desired. Given its complexity, it is desired to presume their activities prior to experiments. While computational approaches demonstrate success in modeling nanozyme activities, they require assumptions about the system to be made. Machine learning (ML) is an alternative approach towards data‐driven material property prediction achieving high performance even on multicomponent complex systems. Despite the growing demand for customized nanozymes, there is no open access nanozyme database. Here, a user‐friendly expandable database of >300 existing inorganic nanozymes is developed by data collection from >100 articles. Data analysis is performed to reveal the features responsible for catalytic activities of nanozymes, and new descriptors are proposed for its ML‐assisted prediction. A random forest regression (RFR) model for evaluation of nanozyme peroxidase activity is developed and optimized by correlation‐based feature selection and hyperparameter tuning, achieving performance up to R2 = 0.796 for Kcat and R2 = 0.627 for Km. Experiment‐confirmed unknown nanozyme activity prediction is also demonstrated. Moreover, the DiZyme expandable, open‐access resource containing the database, predictive algorithm, and visualization tool is developed to boost novel nanozyme discovery worldwide (https://dizyme.net).

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GOST |
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GOST Copy
Razlivina J. et al. DiZyme: Open‐Access Expandable Resource for Quantitative Prediction of Nanozyme Catalytic Activity // Small. 2022. Vol. 18. No. 12. p. 2105673.
GOST all authors (up to 50) Copy
Razlivina J., Serov N., Shapovalova O., Vinogradov V. DiZyme: Open‐Access Expandable Resource for Quantitative Prediction of Nanozyme Catalytic Activity // Small. 2022. Vol. 18. No. 12. p. 2105673.
RIS |
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RIS Copy
TY - JOUR
DO - 10.1002/smll.202105673
UR - https://onlinelibrary.wiley.com/doi/10.1002/smll.202105673
TI - DiZyme: Open‐Access Expandable Resource for Quantitative Prediction of Nanozyme Catalytic Activity
T2 - Small
AU - Razlivina, Julia
AU - Serov, Nikita
AU - Shapovalova, Olga
AU - Vinogradov, Vladimir
PY - 2022
DA - 2022/01/14
PB - Wiley
SP - 2105673
IS - 12
VL - 18
PMID - 35032097
SN - 1613-6810
SN - 1613-6829
ER -
BibTex |
Cite this
BibTex (up to 50 authors) Copy
@article{2022_Razlivina,
author = {Julia Razlivina and Nikita Serov and Olga Shapovalova and Vladimir Vinogradov},
title = {DiZyme: Open‐Access Expandable Resource for Quantitative Prediction of Nanozyme Catalytic Activity},
journal = {Small},
year = {2022},
volume = {18},
publisher = {Wiley},
month = {jan},
url = {https://onlinelibrary.wiley.com/doi/10.1002/smll.202105673},
number = {12},
pages = {2105673},
doi = {10.1002/smll.202105673}
}
MLA
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MLA Copy
Razlivina, Julia, et al. “DiZyme: Open‐Access Expandable Resource for Quantitative Prediction of Nanozyme Catalytic Activity.” Small, vol. 18, no. 12, Jan. 2022, p. 2105673. https://onlinelibrary.wiley.com/doi/10.1002/smll.202105673.