Small, volume 19, issue 19, pages 2207106

Quantitative Prediction of Inorganic Nanomaterial Cellular Toxicity via Machine Learning

Publication typeJournal Article
Publication date2023-02-11
Journal: Small
Quartile SCImago
Q1
Quartile WOS
Q1
Impact factor13.3
ISSN16136810, 16136829
General Chemistry
Biotechnology
General Materials Science
Biomaterials
Abstract

Organic chemistry has seen colossal progress due to machine learning (ML). However, the translation of artificial intelligence (AI) into materials science is challenging, where biological behavior prediction becomes even more complicated. Nanotoxicity is a critical parameter that describes their interaction with the living organisms screened in every bio‐related research. To prevent excessive experiments, such properties have to be pre‐evaluated. Several existing ML models partially fulfill the gap by predicting whether a nanomaterial is toxic or not. Yet, this binary categorization neglects the concentration dependencies crucial for experimental scientists. Here, an ML‐based approach is proposed to the quantitative prediction of inorganic nanomaterial cytotoxicity achieving the precision expressed by 10‐fold cross‐validation (CV) Q2 = 0.86 with the root mean squared error (RMSE) of 12.2% obtained by the correlation‐based feature selection and grid search‐based model hyperparameters optimization. To provide further model flexibility, quantitative atom property‐based nanomaterial descriptors are introduced allowing the model to extrapolate on unseen samples. Feature importance is calculated to find an interpretable model with optimal decision‐making. These findings allow experimental scientists to perform primary in silico candidate screening and minimize the number of excessive, labor‐intensive experiments enabling the rapid development of nanomaterials for medicinal purposes.

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GOST |
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GOST Copy
Shirokii N. et al. Quantitative Prediction of Inorganic Nanomaterial Cellular Toxicity via Machine Learning // Small. 2023. Vol. 19. No. 19. p. 2207106.
GOST all authors (up to 50) Copy
Shirokii N., Din Y., Petrov I., Seregin Y., Sirotenko S., Razlivina J., Serov N., Vinogradov V. Quantitative Prediction of Inorganic Nanomaterial Cellular Toxicity via Machine Learning // Small. 2023. Vol. 19. No. 19. p. 2207106.
RIS |
Cite this
RIS Copy
TY - JOUR
DO - 10.1002/smll.202207106
UR - https://onlinelibrary.wiley.com/doi/10.1002/smll.202207106
TI - Quantitative Prediction of Inorganic Nanomaterial Cellular Toxicity via Machine Learning
T2 - Small
AU - Shirokii, Nikolai
AU - Din, Yevgeniya
AU - Petrov, Ilya
AU - Seregin, Yurii
AU - Sirotenko, Sofia
AU - Razlivina, Julia
AU - Serov, Nikita
AU - Vinogradov, Vladimir
PY - 2023
DA - 2023/02/11
PB - Wiley
SP - 2207106
IS - 19
VL - 19
SN - 1613-6810
SN - 1613-6829
ER -
BibTex |
Cite this
BibTex Copy
@article{2023_Shirokii,
author = {Nikolai Shirokii and Yevgeniya Din and Ilya Petrov and Yurii Seregin and Sofia Sirotenko and Julia Razlivina and Nikita Serov and Vladimir Vinogradov},
title = {Quantitative Prediction of Inorganic Nanomaterial Cellular Toxicity via Machine Learning},
journal = {Small},
year = {2023},
volume = {19},
publisher = {Wiley},
month = {feb},
url = {https://onlinelibrary.wiley.com/doi/10.1002/smll.202207106},
number = {19},
pages = {2207106},
doi = {10.1002/smll.202207106}
}
MLA
Cite this
MLA Copy
Shirokii, Nikolai, et al. “Quantitative Prediction of Inorganic Nanomaterial Cellular Toxicity via Machine Learning.” Small, vol. 19, no. 19, Feb. 2023, p. 2207106. https://onlinelibrary.wiley.com/doi/10.1002/smll.202207106.
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