Open Access
tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences
Publication type: Book Chapter
Publication date: 2019-04-24
scimago Q4
SJR: 0.354
CiteScore: 2.1
Impact factor: —
ISSN: 10643745, 19406029
PubMed ID:
31020551
Abstract
Transfer RNAs are the largest, most complex non-coding RNA family, universal to all living organisms. tRNAscan-SE has been the de facto tool for predicting tRNA genes in whole genomes. The newly developed version 2.0 has incorporated advanced methodologies with improved probabilistic search software and a suite of new gene models, enabling better functional classification of predicted genes. This chapter describes the use of the UNIX command-driven and online web versions, illustrating different search modes and options.
Found
Nothing found, try to update filter.
Found
Nothing found, try to update filter.
Top-30
Journals
|
10
20
30
40
50
60
70
80
90
100
|
|
|
Mitochondrial DNA Part B: Resources
94 publications, 6.73%
|
|
|
Microbiology Resource Announcements
84 publications, 6.01%
|
|
|
Scientific data
66 publications, 4.72%
|
|
|
Frontiers in Microbiology
44 publications, 3.15%
|
|
|
BMC Genomics
40 publications, 2.86%
|
|
|
Scientific Reports
38 publications, 2.72%
|
|
|
Genome Biology and Evolution
27 publications, 1.93%
|
|
|
Frontiers in Plant Science
24 publications, 1.72%
|
|
|
BMC Plant Biology
22 publications, 1.57%
|
|
|
Nature Communications
20 publications, 1.43%
|
|
|
Nucleic Acids Research
18 publications, 1.29%
|
|
|
Viruses
17 publications, 1.22%
|
|
|
Genes
17 publications, 1.22%
|
|
|
Microorganisms
16 publications, 1.15%
|
|
|
G3: Genes, Genomes, Genetics
14 publications, 1%
|
|
|
Frontiers in Genetics
13 publications, 0.93%
|
|
|
Plants
11 publications, 0.79%
|
|
|
International Journal of Molecular Sciences
11 publications, 0.79%
|
|
|
Frontiers in Marine Science
11 publications, 0.79%
|
|
|
Gene
11 publications, 0.79%
|
|
|
Microbiology spectrum
10 publications, 0.72%
|
|
|
International Journal of Systematic and Evolutionary Microbiology
10 publications, 0.72%
|
|
|
Plant Journal
9 publications, 0.64%
|
|
|
Journal of Fungi
8 publications, 0.57%
|
|
|
Archives of Microbiology
8 publications, 0.57%
|
|
|
Molecular Phylogenetics and Evolution
8 publications, 0.57%
|
|
|
eLife
8 publications, 0.57%
|
|
|
bioRxiv
8 publications, 0.57%
|
|
|
Frontiers in Cellular and Infection Microbiology
7 publications, 0.5%
|
|
|
10
20
30
40
50
60
70
80
90
100
|
Publishers
|
50
100
150
200
250
300
350
|
|
|
Springer Nature
332 publications, 23.77%
|
|
|
Cold Spring Harbor Laboratory
167 publications, 11.95%
|
|
|
Elsevier
148 publications, 10.59%
|
|
|
MDPI
118 publications, 8.45%
|
|
|
American Society for Microbiology
111 publications, 7.95%
|
|
|
Taylor & Francis
105 publications, 7.52%
|
|
|
Frontiers Media S.A.
103 publications, 7.37%
|
|
|
Oxford University Press
96 publications, 6.87%
|
|
|
Wiley
71 publications, 5.08%
|
|
|
Microbiology Society
14 publications, 1%
|
|
|
Public Library of Science (PLoS)
13 publications, 0.93%
|
|
|
Pensoft Publishers
11 publications, 0.79%
|
|
|
Canadian Science Publishing
8 publications, 0.57%
|
|
|
eLife Sciences Publications
8 publications, 0.57%
|
|
|
F1000 Research
6 publications, 0.43%
|
|
|
American Chemical Society (ACS)
6 publications, 0.43%
|
|
|
Scientific Societies
6 publications, 0.43%
|
|
|
Proceedings of the National Academy of Sciences (PNAS)
6 publications, 0.43%
|
|
|
PeerJ
5 publications, 0.36%
|
|
|
American Association for the Advancement of Science (AAAS)
5 publications, 0.36%
|
|
|
Mary Ann Liebert
4 publications, 0.29%
|
|
|
Cambridge University Press
3 publications, 0.21%
|
|
|
Research Square Platform LLC
3 publications, 0.21%
|
|
|
The Royal Society
2 publications, 0.14%
|
|
|
The Korean Society of Genetics
2 publications, 0.14%
|
|
|
Korean Society of Mycology
2 publications, 0.14%
|
|
|
Magnolia Press
2 publications, 0.14%
|
|
|
Pleiades Publishing
2 publications, 0.14%
|
|
|
Walter de Gruyter
2 publications, 0.14%
|
|
|
50
100
150
200
250
300
350
|
- We do not take into account publications without a DOI.
- Statistics recalculated weekly.
Are you a researcher?
Create a profile to get free access to personal recommendations for colleagues and new articles.
Metrics
1.4k
Total citations:
1398
Citations from 2024:
551
(39.44%)
Cite this
GOST |
RIS |
BibTex
Cite this
GOST
Copy
Chan P. P., Lowe T. M. tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences // Methods in Molecular Biology. 2019. Vol. 1962. pp. 1-14.
GOST all authors (up to 50)
Copy
Chan P. P., Lowe T. M. tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences // Methods in Molecular Biology. 2019. Vol. 1962. pp. 1-14.
Cite this
RIS
Copy
TY - GENERIC
DO - 10.1007/978-1-4939-9173-0_1
UR - https://doi.org/10.1007/978-1-4939-9173-0_1
TI - tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences
T2 - Methods in Molecular Biology
AU - Chan, Patricia P.
AU - Lowe, Todd M.
PY - 2019
DA - 2019/04/24
PB - Springer Nature
SP - 1-14
VL - 1962
PMID - 31020551
SN - 1064-3745
SN - 1940-6029
ER -
Cite this
BibTex (up to 50 authors)
Copy
@incollection{2019_Chan,
author = {Patricia P. Chan and Todd M. Lowe},
title = {tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences},
publisher = {Springer Nature},
year = {2019},
volume = {1962},
pages = {1--14},
month = {apr}
}