Virus Genes, volume 54, issue 4, pages 608-611
First detection and full genome sequence of porcine circovirus type 3 in Russia
Yuzhakov Anton
1
,
Raev Sergei A
1
,
Alekseev Konstantin P.
1
,
Grebennikova Tatiana V
1
,
Verkhovsky Oleg A
1
,
Zaberezhny Alexei D
2
,
Aliper Taras I
2
1
Laboratory of Virology, Diagnostics and Prevention Research Institute for Human and Animal Diseases, Moscow, Russia
|
2
Y. R. Kovalenko All-Russian Research Institute of Experimental Veterinary Medicine, Moscow, Russia
|
Publication type: Journal Article
Publication date: 2018-06-11
Journal:
Virus Genes
Quartile SCImago
Q3
Quartile WOS
Q4
Impact factor: 1.6
ISSN: 09208569, 1572994X
Molecular Biology
General Medicine
Genetics
Virology
Abstract
Porcine circovirus type 3 (PCV3) was firstly detected in 2016 in USA. Later PCV3 was discovered in Asia, Europe, and South America. The present investigation demonstrates for the first time the circulation of PCV3 among pigs in Russia. The viruses were detected at two geographically distant unrelated commercial farms with records of reproductive failure (abortions, stillbirth), porcine dermatitis, and nephropathy syndrome (PDNS). The two farms were located in the region of Smolensk (western part of Russia) and the region of Tyumen (West Siberia, Russia). We investigated samples collected from pigs of different ages. We performed PCR for the PCV3 DNA detection. The DNA of PCV3 was detected in serum, kidney, heart, spleen, pleural effusion, and peritoneal cavity fluid samples. Two viral genomes were sequenced and the corresponding strains were named PCV3-RU/SM17 (the strain from Smolensk region) and PCV3-RU/TY17 (the strain from Tyumen region). The full genome sequences of both strains were 2000 nucleotides in length and contained at least two ORFs, encoding the Cap and Rep proteins. Full sequence alignment revealed a 99.3% identity between the PCV3-RU/SM17 and PCV3-RU/TY17 strains. Molecular analysis showed that the two strains from Russia are highly homologous to viruses identified in other countries, with a 98.5–99.6% homology for PCV3-RU/TY17 and 97.9–99.0 for PCV3-RU/SM17. The PCV3-RU/SM17 and PCV3-RU/TY17 strains were found to form a monophyletic group in a phylogenetic tree based on PCV3 complete genome sequences.
Citations by journals
Citations by publishers
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14
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Elsevier
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Elsevier
14 publications, 25%
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Springer Nature
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Springer Nature
11 publications, 19.64%
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Multidisciplinary Digital Publishing Institute (MDPI)
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Multidisciplinary Digital Publishing Institute (MDPI)
11 publications, 19.64%
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Frontiers Media S.A.
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Frontiers Media S.A.
7 publications, 12.5%
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Wiley
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Wiley
6 publications, 10.71%
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SAGE
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SAGE
2 publications, 3.57%
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Walter de Gruyter
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Walter de Gruyter
1 publication, 1.79%
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Zhejiang University Press
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Zhejiang University Press, 1, 1.79%
Zhejiang University Press
1 publication, 1.79%
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Hindawi Limited
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Hindawi Limited
1 publication, 1.79%
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Agrarian Science
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Agrarian Science, 1, 1.79%
Agrarian Science
1 publication, 1.79%
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2
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14
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- We do not take into account publications that without a DOI.
- Statistics recalculated only for publications connected to researchers, organizations and labs registered on the platform.
- Statistics recalculated weekly.
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Yuzhakov A. et al. First detection and full genome sequence of porcine circovirus type 3 in Russia // Virus Genes. 2018. Vol. 54. No. 4. pp. 608-611.
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Yuzhakov A., Raev S. A., Alekseev K. P., Grebennikova T. V., Verkhovsky O. A., Zaberezhny A. D., Aliper T. I. First detection and full genome sequence of porcine circovirus type 3 in Russia // Virus Genes. 2018. Vol. 54. No. 4. pp. 608-611.
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TY - JOUR
DO - 10.1007/s11262-018-1582-z
UR - https://doi.org/10.1007%2Fs11262-018-1582-z
TI - First detection and full genome sequence of porcine circovirus type 3 in Russia
T2 - Virus Genes
AU - Yuzhakov, Anton
AU - Raev, Sergei A
AU - Alekseev, Konstantin P.
AU - Grebennikova, Tatiana V
AU - Verkhovsky, Oleg A
AU - Zaberezhny, Alexei D
AU - Aliper, Taras I
PY - 2018
DA - 2018/06/11 00:00:00
PB - Springer Nature
SP - 608-611
IS - 4
VL - 54
SN - 0920-8569
SN - 1572-994X
ER -
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@article{2018_Yuzhakov,
author = {Anton Yuzhakov and Sergei A Raev and Konstantin P. Alekseev and Tatiana V Grebennikova and Oleg A Verkhovsky and Alexei D Zaberezhny and Taras I Aliper},
title = {First detection and full genome sequence of porcine circovirus type 3 in Russia},
journal = {Virus Genes},
year = {2018},
volume = {54},
publisher = {Springer Nature},
month = {jun},
url = {https://doi.org/10.1007%2Fs11262-018-1582-z},
number = {4},
pages = {608--611},
doi = {10.1007/s11262-018-1582-z}
}
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Yuzhakov, Anton, et al. “First detection and full genome sequence of porcine circovirus type 3 in Russia.” Virus Genes, vol. 54, no. 4, Jun. 2018, pp. 608-611. https://doi.org/10.1007%2Fs11262-018-1582-z.
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