Nanoscale lipid domains determine the dynamic molecular portraits of mixed DOPC/DOPS bilayers in a fluid phase: A computational insight
Publication type: Journal Article
Publication date: 2024-10-01
scimago Q1
wos Q3
SJR: 0.812
CiteScore: 6.8
Impact factor: 2.5
ISSN: 00052736, 18792642
PubMed ID:
39111381
Abstract
Lateral heterogeneity, or mosaicity, is a fundamental property inherent to cell membranes that is crucial for their functioning. While microscopic inhomogeneities (e.g. rafts) are easily detected experimentally, lipid domains with nanoscale dimensions (nanoclusters of nanodomains, NDs) resist reliable characterization by instrumental methods. In such a case, important insight can be gained via computer modeling. Here, NDs composed of lipid's head groups in the mixed zwitterionic dioleoylphosphatidylcholine (DOPC) and negatively charged dioleoylphosphatidylserine (DOPS) bilayers were studied by molecular dynamics. A new algorithm has been developed to identify NDs. Unlike most similar methods, it implicitly considers the heterogeneous distribution of lipid head atomic density and does not require subjectively chosen parameters. In DOPS-rich membranes, lipids form more compact and stable NDs due to strong interlipid interactions. In DOPC-rich systems, NDs arise due to the "packing" effect of weakly bound lipid heads. The clustering picture is related to the physical properties of the bilayer surface: DOPS-rich systems show more pronounced surface heterogeneity of hydrophilic/hydrophobic regions compared to DOPC-rich ones. The results obtained are important for the effective quantitative characterization of the "dynamic molecular portrait" of a membrane surface – its "fingerprint" characterizing dynamical distribution of its physicochemical properties.
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Veretenenko I. I. et al. Nanoscale lipid domains determine the dynamic molecular portraits of mixed DOPC/DOPS bilayers in a fluid phase: A computational insight // Biochimica et Biophysica Acta - Biomembranes. 2024. Vol. 1866. No. 7. p. 184376.
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Veretenenko I. I., Trofimov Y. A., Krylov N. A., Efremov R. Nanoscale lipid domains determine the dynamic molecular portraits of mixed DOPC/DOPS bilayers in a fluid phase: A computational insight // Biochimica et Biophysica Acta - Biomembranes. 2024. Vol. 1866. No. 7. p. 184376.
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TY - JOUR
DO - 10.1016/j.bbamem.2024.184376
UR - https://linkinghub.elsevier.com/retrieve/pii/S000527362400107X
TI - Nanoscale lipid domains determine the dynamic molecular portraits of mixed DOPC/DOPS bilayers in a fluid phase: A computational insight
T2 - Biochimica et Biophysica Acta - Biomembranes
AU - Veretenenko, Irina I.
AU - Trofimov, Yury A
AU - Krylov, Nikolay A
AU - Efremov, R.G.
PY - 2024
DA - 2024/10/01
PB - Elsevier
SP - 184376
IS - 7
VL - 1866
PMID - 39111381
SN - 0005-2736
SN - 1879-2642
ER -
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@article{2024_Veretenenko,
author = {Irina I. Veretenenko and Yury A Trofimov and Nikolay A Krylov and R.G. Efremov},
title = {Nanoscale lipid domains determine the dynamic molecular portraits of mixed DOPC/DOPS bilayers in a fluid phase: A computational insight},
journal = {Biochimica et Biophysica Acta - Biomembranes},
year = {2024},
volume = {1866},
publisher = {Elsevier},
month = {oct},
url = {https://linkinghub.elsevier.com/retrieve/pii/S000527362400107X},
number = {7},
pages = {184376},
doi = {10.1016/j.bbamem.2024.184376}
}
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Veretenenko, Irina I., et al. “Nanoscale lipid domains determine the dynamic molecular portraits of mixed DOPC/DOPS bilayers in a fluid phase: A computational insight.” Biochimica et Biophysica Acta - Biomembranes, vol. 1866, no. 7, Oct. 2024, p. 184376. https://linkinghub.elsevier.com/retrieve/pii/S000527362400107X.
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