Ab Initio Anharmonic Analysis of Vibrational Spectra of Uracil Using the Numerical-Analytic Implementation of Operator Van Vleck Perturbation Theory
Publication type: Journal Article
Publication date: 2015-06-11
scimago Q2
wos Q2
SJR: 0.634
CiteScore: 4.8
Impact factor: 2.8
ISSN: 10895639, 15205215
PubMed ID:
26020099
Physical and Theoretical Chemistry
Abstract
The numerical-analytic implementation of the operator version of the canonical Van Vleck second-order vibrational perturbation theory (CVPT2) is employed for a purely ab initio prediction and interpretation of the infrared (IR) and Raman anharmonic spectra of a medium-size molecule of the diketo tautomer of uracil (2,4(1H,3H)-pyrimidinedione), which has high biological importance as one of the four RNA nucleobases. A nonempirical, semidiagonal quartic potential energy surface (PES) expressed in normal coordinates was evaluated at the MP2/cc-pVTZ level of theory. The quality of the PES was improved by replacing the harmonic frequencies with the "best" estimated CCSD(T)-based values taken from the literature. The theoretical method is enhanced by an accurate treatment of multiple Fermi and Darling-Dennison resonances with evaluation of the corresponding resonance constants W and K (CVPT2+WK method). A prediction of the anharmonic frequencies as well as IR and Raman intensities was used for a detailed interpretation of the experimental spectra of uracil. Very good agreement between predicted and observed vibrational frequencies has been achieved (RMSD ∼4.5 cm(-1)). The model employed gave a theoretically robust treatment of the multiple resonances in the 1680-1790 cm(-1) region. Our new analysis gives the most reliable reassignments of IR and Raman spectra of uracil available to date.
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Total citations:
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GOST
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Krasnoshchekov S. V. et al. Ab Initio Anharmonic Analysis of Vibrational Spectra of Uracil Using the Numerical-Analytic Implementation of Operator Van Vleck Perturbation Theory // Journal of Physical Chemistry A. 2015. Vol. 119. No. 25. pp. 6723-6737.
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Krasnoshchekov S. V., Vogt N., Stepanov N., Stepanov N. F. Ab Initio Anharmonic Analysis of Vibrational Spectra of Uracil Using the Numerical-Analytic Implementation of Operator Van Vleck Perturbation Theory // Journal of Physical Chemistry A. 2015. Vol. 119. No. 25. pp. 6723-6737.
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RIS
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TY - JOUR
DO - 10.1021/acs.jpca.5b03241
UR - https://pubs.acs.org/doi/10.1021/acs.jpca.5b03241
TI - Ab Initio Anharmonic Analysis of Vibrational Spectra of Uracil Using the Numerical-Analytic Implementation of Operator Van Vleck Perturbation Theory
T2 - Journal of Physical Chemistry A
AU - Krasnoshchekov, Sergey V
AU - Vogt, Natalja
AU - Stepanov, Nikolay
AU - Stepanov, Nikolay F
PY - 2015
DA - 2015/06/11
PB - American Chemical Society (ACS)
SP - 6723-6737
IS - 25
VL - 119
PMID - 26020099
SN - 1089-5639
SN - 1520-5215
ER -
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BibTex (up to 50 authors)
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@article{2015_Krasnoshchekov,
author = {Sergey V Krasnoshchekov and Natalja Vogt and Nikolay Stepanov and Nikolay F Stepanov},
title = {Ab Initio Anharmonic Analysis of Vibrational Spectra of Uracil Using the Numerical-Analytic Implementation of Operator Van Vleck Perturbation Theory},
journal = {Journal of Physical Chemistry A},
year = {2015},
volume = {119},
publisher = {American Chemical Society (ACS)},
month = {jun},
url = {https://pubs.acs.org/doi/10.1021/acs.jpca.5b03241},
number = {25},
pages = {6723--6737},
doi = {10.1021/acs.jpca.5b03241}
}
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MLA
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Krasnoshchekov, Sergey V., et al. “Ab Initio Anharmonic Analysis of Vibrational Spectra of Uracil Using the Numerical-Analytic Implementation of Operator Van Vleck Perturbation Theory.” Journal of Physical Chemistry A, vol. 119, no. 25, Jun. 2015, pp. 6723-6737. https://pubs.acs.org/doi/10.1021/acs.jpca.5b03241.
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