Open Access

Nature Communications, volume 10, issue 1, publication number 1176

Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila

Ulianov Sergey V ^{1, 2}

Doronin Semen A ³

Khrameeva Ekaterina E. ^{4, 5}

Kos Pavel I ⁶

Luzhin Artem V ²

Starikov Sergei S ⁷

Galitsyna Aleksandra A. ^{2, 4, 5, 7}

Nenasheva Valentina V ³

Ilyin Artem A ³

Flyamer Ilya M. ⁸

Mikhaleva Elena A ³

Logacheva Mariya D ^{5, 9, 10}

Gelfand Mikhail S. ^{4, 5, 11}

Chertovich Alexander V ⁶

Gavrilov Alexey A ²

Razin Sergey V ^{1, 2}

Shevelyov Yuri Y ³

Hide authors affiliations Show authors affiliations: 11 affiliations

Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia |

Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia |

Institute of Molecular genetics, Russian Academy of Sciences, Moscow, Russia |

⁴

Institute for Information Transmission Problems (The Kharkevich Institute), Russian Academy of Sciences, Moscow, Russia |

⁵

Skolkovo Institute of Science and Technology, Skolkovo, Russia |

⁶

Faculty of Physics, M.V. Lomonosov Moscow State University, Moscow, Russia |

⁷

Faculty of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Moscow, Russia |

⁸

MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK |

⁹

Belozersky Institute of Physico-Chemical Biology, M.V. Lomonosov Moscow State University, Moscow, Russia |

¹⁰

Russia Extreme Biology Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia |

¹¹

Faculty of Computer Science, National Research University Higher School of Economics, Moscow, Russia |

Publication type: Journal Article

Publication date: 2019-03-12

Springer Nature

Journal: Nature Communications

Quartile SCImago

Quartile WOS

Impact factor: 16.6

ISSN: 20411723

DOI: 10.1038/s41467-019-09185-y

Copy DOI

PubMed ID: 30862957

General Chemistry

General Biochemistry, Genetics and Molecular Biology

Multidisciplinary

General Physics and Astronomy

Abstract

How the nuclear lamina (NL) impacts on global chromatin architecture is poorly understood. Here, we show that NL disruption in Drosophila S2 cells leads to chromatin compaction and repositioning from the nuclear envelope. This increases the chromatin density in a fraction of topologically-associating domains (TADs) enriched in active chromatin and enhances interactions between active and inactive chromatin. Importantly, upon NL disruption the NL-associated TADs become more acetylated at histone H3 and less compact, while background transcription is derepressed. Two-colour FISH confirms that a TAD becomes less compact following its release from the NL. Finally, polymer simulations show that chromatin binding to the NL can per se compact attached TADs. Collectively, our findings demonstrate a dual function of the NL in shaping the 3D genome. Attachment of TADs to the NL makes them more condensed but decreases the overall chromatin density in the nucleus by stretching interphase chromosomes.The role of the nuclear lamina (NL) in chromatin architecture is still poorly understood. Here, the authors provide evidence that disruption of the NL in Drosophila cells leads to overall chromatin compaction and repositioning from the nuclear envelope, whereas lamina-associated regions become less compacted and transcription within them is increased.

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Citations by journals

	1 2 3 4 5 6
Cells	Cells, 6, 7.41% Cells 6 publications, 7.41%
International Journal of Molecular Sciences	International Journal of Molecular Sciences, 4, 4.94% International Journal of Molecular Sciences 4 publications, 4.94%
Frontiers in Genetics	Frontiers in Genetics, 3, 3.7% Frontiers in Genetics 3 publications, 3.7%
Frontiers in Cell and Developmental Biology	Frontiers in Cell and Developmental Biology, 3, 3.7% Frontiers in Cell and Developmental Biology 3 publications, 3.7%
Biophysical Journal	Biophysical Journal, 3, 3.7% Biophysical Journal 3 publications, 3.7%
Nucleic Acids Research	Nucleic Acids Research, 3, 3.7% Nucleic Acids Research 3 publications, 3.7%
APL Bioengineering	APL Bioengineering, 2, 2.47% APL Bioengineering 2 publications, 2.47%
Current Opinion in Genetics and Development	Current Opinion in Genetics and Development, 2, 2.47% Current Opinion in Genetics and Development 2 publications, 2.47%
Current Opinion in Cell Biology	Current Opinion in Cell Biology, 2, 2.47% Current Opinion in Cell Biology 2 publications, 2.47%
Cell Reports	Cell Reports, 2, 2.47% Cell Reports 2 publications, 2.47%
Biochemistry (Moscow)	Biochemistry (Moscow), 2, 2.47% Biochemistry (Moscow) 2 publications, 2.47%
Nucleus	Nucleus, 2, 2.47% Nucleus 2 publications, 2.47%
Biomolecules	Biomolecules, 1, 1.23% Biomolecules 1 publication, 1.23%
Genes	Genes, 1, 1.23% Genes 1 publication, 1.23%
Frontiers in Plant Science	Frontiers in Plant Science, 1, 1.23% Frontiers in Plant Science 1 publication, 1.23%
Nature Communications	Nature Communications, 1, 1.23% Nature Communications 1 publication, 1.23%
Orphanet Journal of Rare Diseases	Orphanet Journal of Rare Diseases, 1, 1.23% Orphanet Journal of Rare Diseases 1 publication, 1.23%
Nature Reviews Molecular Cell Biology	Nature Reviews Molecular Cell Biology, 1, 1.23% Nature Reviews Molecular Cell Biology 1 publication, 1.23%
Biology Direct	Biology Direct, 1, 1.23% Biology Direct 1 publication, 1.23%
Science China Life Sciences	Science China Life Sciences, 1, 1.23% Science China Life Sciences 1 publication, 1.23%
Protein and Cell	Protein and Cell, 1, 1.23% Protein and Cell 1 publication, 1.23%
Nature Aging	Nature Aging, 1, 1.23% Nature Aging 1 publication, 1.23%
PLoS Pathogens	PLoS Pathogens, 1, 1.23% PLoS Pathogens 1 publication, 1.23%
Trends in Cell Biology	Trends in Cell Biology, 1, 1.23% Trends in Cell Biology 1 publication, 1.23%
Current Opinion in Neurobiology	Current Opinion in Neurobiology, 1, 1.23% Current Opinion in Neurobiology 1 publication, 1.23%
Molecular Cell	Molecular Cell, 1, 1.23% Molecular Cell 1 publication, 1.23%
Free Radical Biology and Medicine	Free Radical Biology and Medicine, 1, 1.23% Free Radical Biology and Medicine 1 publication, 1.23%
FEBS Letters	FEBS Letters, 1, 1.23% FEBS Letters 1 publication, 1.23%
Annals of the New York Academy of Sciences	Annals of the New York Academy of Sciences, 1, 1.23% Annals of the New York Academy of Sciences 1 publication, 1.23%

	1 2 3 4 5 6

Citations by publishers

	2 4 6 8 10 12
Multidisciplinary Digital Publishing Institute (MDPI)	Multidisciplinary Digital Publishing Institute (MDPI), 12, 14.81% Multidisciplinary Digital Publishing Institute (MDPI) 12 publications, 14.81%
Elsevier	Elsevier, 11, 13.58% Elsevier 11 publications, 13.58%
Springer Nature	Springer Nature, 10, 12.35% Springer Nature 10 publications, 12.35%
Frontiers Media S.A.	Frontiers Media S.A., 7, 8.64% Frontiers Media S.A. 7 publications, 8.64%
Oxford University Press	Oxford University Press, 5, 6.17% Oxford University Press 5 publications, 6.17%
Biophysical Society	Biophysical Society, 3, 3.7% Biophysical Society 3 publications, 3.7%
Pleiades Publishing	Pleiades Publishing, 3, 3.7% Pleiades Publishing 3 publications, 3.7%
Taylor & Francis	Taylor & Francis, 3, 3.7% Taylor & Francis 3 publications, 3.7%
American Institute of Physics (AIP)	American Institute of Physics (AIP), 2, 2.47% American Institute of Physics (AIP) 2 publications, 2.47%
Wiley	Wiley, 2, 2.47% Wiley 2 publications, 2.47%
American Chemical Society (ACS)	American Chemical Society (ACS), 2, 2.47% American Chemical Society (ACS) 2 publications, 2.47%
Public Library of Science (PLoS)	Public Library of Science (PLoS), 1, 1.23% Public Library of Science (PLoS) 1 publication, 1.23%
Royal Society of Chemistry (RSC)	Royal Society of Chemistry (RSC), 1, 1.23% Royal Society of Chemistry (RSC) 1 publication, 1.23%
American Association for the Advancement of Science (AAAS)	American Association for the Advancement of Science (AAAS), 1, 1.23% American Association for the Advancement of Science (AAAS) 1 publication, 1.23%
EMBO press	EMBO press, 1, 1.23% EMBO press 1 publication, 1.23%
Proceedings of the National Academy of Sciences (PNAS)	Proceedings of the National Academy of Sciences (PNAS), 1, 1.23% Proceedings of the National Academy of Sciences (PNAS) 1 publication, 1.23%
eLife Sciences Publications	eLife Sciences Publications, 1, 1.23% eLife Sciences Publications 1 publication, 1.23%
American Society for Cell Biology (ASCB)	American Society for Cell Biology (ASCB), 1, 1.23% American Society for Cell Biology (ASCB) 1 publication, 1.23%
Rockefeller University Press	Rockefeller University Press, 1, 1.23% Rockefeller University Press 1 publication, 1.23%
American Physical Society (APS)	American Physical Society (APS), 1, 1.23% American Physical Society (APS) 1 publication, 1.23%
	2 4 6 8 10 12

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Ulianov S. V. et al. Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila // Nature Communications. 2019. Vol. 10. No. 1. 1176

GOST all authors (up to 50) Copy

Ulianov S. V., Doronin S. A., Khrameeva E., Kos P. I., Luzhin A. V., Starikov S. S., Galitsyna A. A., Nenasheva V. V., Ilyin A. A., Flyamer I. M., Mikhaleva E. A., Logacheva M. D., Gelfand M. S., Chertovich A. V., Gavrilov A. A., Razin S. V., Shevelyov Y. Y. Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila // Nature Communications. 2019. Vol. 10. No. 1. 1176

RIS |

Cite this

RIS Copy

TY - JOUR

DO - 10.1038/s41467-019-09185-y

UR - https://doi.org/10.1038%2Fs41467-019-09185-y

TI - Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila

T2 - Nature Communications

AU - Ulianov, Sergey V

AU - Doronin, Semen A

AU - Khrameeva, Ekaterina E.

AU - Kos, Pavel I

AU - Luzhin, Artem V

AU - Starikov, Sergei S

AU - Galitsyna, Aleksandra A.

AU - Nenasheva, Valentina V

AU - Ilyin, Artem A

AU - Flyamer, Ilya M.

AU - Mikhaleva, Elena A

AU - Logacheva, Mariya D

AU - Gelfand, Mikhail S.

AU - Chertovich, Alexander V

AU - Gavrilov, Alexey A

AU - Razin, Sergey V

AU - Shevelyov, Yuri Y

PY - 2019

DA - 2019/03/12 00:00:00

PB - Springer Nature

IS - 1

VL - 10

PMID - 30862957

SN - 2041-1723

ER -

BibTex

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BibTex Copy

@article{2019_Ulianov,

author = {Sergey V Ulianov and Semen A Doronin and Ekaterina E. Khrameeva and Pavel I Kos and Artem V Luzhin and Sergei S Starikov and Aleksandra A. Galitsyna and Valentina V Nenasheva and Artem A Ilyin and Ilya M. Flyamer and Elena A Mikhaleva and Mariya D Logacheva and Mikhail S. Gelfand and Alexander V Chertovich and Alexey A Gavrilov and Sergey V Razin and Yuri Y Shevelyov},

title = {Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila},

journal = {Nature Communications},

year = {2019},

volume = {10},

publisher = {Springer Nature},

month = {mar},

url = {https://doi.org/10.1038%2Fs41467-019-09185-y},

number = {1},

doi = {10.1038/s41467-019-09185-y}

}

Found error?

Publisher

Springer Nature

Journal

Nature Communications

Quartile SCImago

Quartile WOS

Impact factor

16.6

ISSN

20411723 (Print)

Labs

Laboratory of Microstructured Polymer Materials

Profiles

Chertovich, Alexander V