Open Access
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
Shingo Miyauchi
1
,
Enikő Kiss
2
,
Alan Kuo
3
,
Elodie Drula
4
,
Annegret Kohler
1
,
Marisol Sánchez-García
5
,
Emmanuelle Morin
1
,
Bill Andreopoulos
3
,
Kerrie W Barry
3
,
Gregory Bonito
6
,
Marc Buée
1
,
Akiko Carver
3
,
Cindy Chen
3
,
Nicolas Cichocki
1
,
Alicia Clum
3
,
David Culley
7
,
Pedro W. Crous
8
,
Laure Fauchery
1
,
Mariangela Girlanda
9
,
Richard D Hayes
3
,
Zsófia Kéri
2
,
Kurt LaButti
3
,
Anna Lipzen
3
,
Vincent Lombard
4
,
John B. Gladden
7
,
François Maillard
1
,
Claude Murat
1
,
Matt Nolan
3
,
Robin A Ohm
3
,
Jasmyn Pangilinan
3
,
Maíra De Freitas Pereira
1
,
SILVIA PEROTTO
9
,
Martina Peter
10
,
Stephanie Pfister
10
,
Robert Riley
3
,
Yaron Sitrit
11
,
J. Benjamin Stielow
8
,
G. Szöllősi
2
,
Lucia Žifčáková
12
,
Martina Štursová
12
,
Joseph W. Spatafora
13
,
Leho Tedersoo
14
,
Lu-Min Vaario
15
,
Akiyoshi Yamada
16
,
Mi Yan
3
,
Pengfei Wang
17
,
Jianping Xu
18
,
Tom Bruns
19
,
Petr Baldrian
12
,
Rytas J Vilgalys
20
,
Christophe Dunand
21
,
B Henrissat
4, 22, 23
,
Igor Grigoriev
3, 19
,
David Hibbett
5
,
László G Nagy
2
,
Francis M. Martin
1, 24
2
Synthetic and Systems Biology Unit, Biological Research Centre, Szeged, Hungary
|
3
4
INRAE, USC1408 Architecture et Fonction des Macromolécules Biologiques, Marseille, France
|
8
Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands
|
21
Publication type: Journal Article
Publication date: 2020-10-12
scimago Q1
wos Q1
SJR: 4.761
CiteScore: 23.4
Impact factor: 15.7
ISSN: 20411723
PubMed ID:
33046698
General Chemistry
General Biochemistry, Genetics and Molecular Biology
General Physics and Astronomy
Abstract
Mycorrhizal fungi are mutualists that play crucial roles in nutrient acquisition in terrestrial ecosystems. Mycorrhizal symbioses arose repeatedly across multiple lineages of Mucoromycotina, Ascomycota, and Basidiomycota. Considerable variation exists in the capacity of mycorrhizal fungi to acquire carbon from soil organic matter. Here, we present a combined analysis of 135 fungal genomes from 73 saprotrophic, endophytic and pathogenic species, and 62 mycorrhizal species, including 29 new mycorrhizal genomes. This study samples ecologically dominant fungal guilds for which there were previously no symbiotic genomes available, including ectomycorrhizal Russulales, Thelephorales and Cantharellales. Our analyses show that transitions from saprotrophy to symbiosis involve (1) widespread losses of degrading enzymes acting on lignin and cellulose, (2) co-option of genes present in saprotrophic ancestors to fulfill new symbiotic functions, (3) diversification of novel, lineage-specific symbiosis-induced genes, (4) proliferation of transposable elements and (5) divergent genetic innovations underlying the convergent origins of the ectomycorrhizal guild. Mycorrhizal symbioses have evolved repeatedly in diverse fungal lineages. A large phylogenomic analysis sheds light on genomic changes associated with transitions from saprotrophy to symbiosis, including divergent genetic innovations underlying the convergent origins of the ectomycorrhizal guild.
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386
Total citations:
386
Citations from 2024:
161
(41.82%)
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GOST
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Miyauchi S. et al. Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits // Nature Communications. 2020. Vol. 11. No. 1. 5125
GOST all authors (up to 50)
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Miyauchi S. et al. Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits // Nature Communications. 2020. Vol. 11. No. 1. 5125
Cite this
RIS
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TY - JOUR
DO - 10.1038/s41467-020-18795-w
UR - https://doi.org/10.1038/s41467-020-18795-w
TI - Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
T2 - Nature Communications
AU - Miyauchi, Shingo
AU - Kiss, Enikő
AU - Kuo, Alan
AU - Drula, Elodie
AU - Kohler, Annegret
AU - Sánchez-García, Marisol
AU - Morin, Emmanuelle
AU - Andreopoulos, Bill
AU - Barry, Kerrie W
AU - Bonito, Gregory
AU - Buée, Marc
AU - Carver, Akiko
AU - Chen, Cindy
AU - Cichocki, Nicolas
AU - Clum, Alicia
AU - Culley, David
AU - Crous, Pedro W.
AU - Fauchery, Laure
AU - Girlanda, Mariangela
AU - Hayes, Richard D
AU - Kéri, Zsófia
AU - LaButti, Kurt
AU - Lipzen, Anna
AU - Lombard, Vincent
AU - Gladden, John B.
AU - Maillard, François
AU - Murat, Claude
AU - Nolan, Matt
AU - Ohm, Robin A
AU - Pangilinan, Jasmyn
AU - Pereira, Maíra De Freitas
AU - PEROTTO, SILVIA
AU - Peter, Martina
AU - Pfister, Stephanie
AU - Riley, Robert
AU - Sitrit, Yaron
AU - Stielow, J. Benjamin
AU - Szöllősi, G.
AU - Žifčáková, Lucia
AU - Štursová, Martina
AU - Spatafora, Joseph W.
AU - Tedersoo, Leho
AU - Vaario, Lu-Min
AU - Yamada, Akiyoshi
AU - Yan, Mi
AU - Wang, Pengfei
AU - Xu, Jianping
AU - Bruns, Tom
AU - Baldrian, Petr
AU - Vilgalys, Rytas J
AU - Dunand, Christophe
AU - Henrissat, B
AU - Grigoriev, Igor
AU - Hibbett, David
AU - Nagy, László G
AU - Martin, Francis M.
PY - 2020
DA - 2020/10/12
PB - Springer Nature
IS - 1
VL - 11
PMID - 33046698
SN - 2041-1723
ER -
Cite this
BibTex (up to 50 authors)
Copy
@article{2020_Miyauchi,
author = {Shingo Miyauchi and Enikő Kiss and Alan Kuo and Elodie Drula and Annegret Kohler and Marisol Sánchez-García and Emmanuelle Morin and Bill Andreopoulos and Kerrie W Barry and Gregory Bonito and Marc Buée and Akiko Carver and Cindy Chen and Nicolas Cichocki and Alicia Clum and David Culley and Pedro W. Crous and Laure Fauchery and Mariangela Girlanda and Richard D Hayes and Zsófia Kéri and Kurt LaButti and Anna Lipzen and Vincent Lombard and John B. Gladden and François Maillard and Claude Murat and Matt Nolan and Robin A Ohm and Jasmyn Pangilinan and Maíra De Freitas Pereira and SILVIA PEROTTO and Martina Peter and Stephanie Pfister and Robert Riley and Yaron Sitrit and J. Benjamin Stielow and G. Szöllősi and Lucia Žifčáková and Martina Štursová and Joseph W. Spatafora and Leho Tedersoo and Lu-Min Vaario and Akiyoshi Yamada and Mi Yan and Pengfei Wang and Jianping Xu and Tom Bruns and Petr Baldrian and Rytas J Vilgalys and others},
title = {Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits},
journal = {Nature Communications},
year = {2020},
volume = {11},
publisher = {Springer Nature},
month = {oct},
url = {https://doi.org/10.1038/s41467-020-18795-w},
number = {1},
pages = {5125},
doi = {10.1038/s41467-020-18795-w}
}