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Nature Communications
,  том 16 ,  издание 1 ,  номер публикации 9592

Data navigation on the ENCODE portal

Тип публикации: Journal Article
Дата публикации: 2025-10-30
Springer Nature
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SJR: 4.904
CiteScore: 23.4
Impact factor: 15.7
ISSN: 20411723
Краткое описание

Spanning two decades, the collaborative ENCODE project aims to identify all the functional elements within human and mouse genomes. To best serve the scientific community, the comprehensive ENCODE data including results from 23,000+ functional genomics experiments, 800+ functional elements characterization experiments and 60,000+ results from integrative computational analyses are available on an open-access data-portal ( https://www.encodeproject.org/ ). The final phase of the project includes data from several novel assays aimed at characterization and validation of genomic elements. In addition to developing and maintaining the data portal, the Data Coordination Center (DCC) implemented and utilised uniform processing pipelines to generate uniformly processed data. Here we report recent updates to the data portal including a redesigned home page, an improved search interface, new custom-designed pages highlighting biologically related datasets and an enhanced cart interface for data visualisation plus user-friendly data download options. A summary of data generated using uniform processing pipelines is also provided.

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Kagda M. S. et al. Data navigation on the ENCODE portal // Nature Communications. 2025. Vol. 16. No. 1. 9592
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Kagda M. S., Lam B., Litton C., Small C., Sloan C. A., Spragins E., Tanaka F., Whaling I., Gabdank I., Youngworth I., Strattan J. S., Hilton J., Jou J., Au J. N., Lee J., Andreeva K., Graham K., Lin K. Z., Simison M., Jolanki O., Sud P., Assis P., Adenekan P., Miyasato S., Zhong W., Luo Y., Myers Z., Cherry J. D., Hitz B. C. Data navigation on the ENCODE portal // Nature Communications. 2025. Vol. 16. No. 1. 9592
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TY - JOUR
DO - 10.1038/s41467-025-64343-9
UR - https://www.nature.com/articles/s41467-025-64343-9
TI - Data navigation on the ENCODE portal
T2 - Nature Communications
AU - Kagda, Meenakshi S
AU - Lam, Bonita
AU - Litton, Casey
AU - Small, Corinn
AU - Sloan, Cricket A
AU - Spragins, Emma
AU - Tanaka, Forrest
AU - Whaling, Ian
AU - Gabdank, Idan
AU - Youngworth, Ingrid
AU - Strattan, J Seth
AU - Hilton, Jason
AU - Jou, Jennifer
AU - Au, Jessica N
AU - Lee, Jin-Wook
AU - Andreeva, Kalina
AU - Graham, Keenan
AU - Lin, Khine Zin
AU - Simison, Matt
AU - Jolanki, Otto
AU - Sud, Paul
AU - Assis, Pedro
AU - Adenekan, Philip
AU - Miyasato, Stuart
AU - Zhong, Weiwei
AU - Luo, Yunhai
AU - Myers, Zachary
AU - Cherry, J D
AU - Hitz, Benjamin C
PY - 2025
DA - 2025/10/30
PB - Springer Nature
IS - 1
VL - 16
SN - 2041-1723
ER -
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@article{2025_Kagda,
author = {Meenakshi S Kagda and Bonita Lam and Casey Litton and Corinn Small and Cricket A Sloan and Emma Spragins and Forrest Tanaka and Ian Whaling and Idan Gabdank and Ingrid Youngworth and J Seth Strattan and Jason Hilton and Jennifer Jou and Jessica N Au and Jin-Wook Lee and Kalina Andreeva and Keenan Graham and Khine Zin Lin and Matt Simison and Otto Jolanki and Paul Sud and Pedro Assis and Philip Adenekan and Stuart Miyasato and Weiwei Zhong and Yunhai Luo and Zachary Myers and J D Cherry and Benjamin C Hitz},
title = {Data navigation on the ENCODE portal},
journal = {Nature Communications},
year = {2025},
volume = {16},
publisher = {Springer Nature},
month = {oct},
url = {https://www.nature.com/articles/s41467-025-64343-9},
number = {1},
pages = {9592},
doi = {10.1038/s41467-025-64343-9}
}
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