Open Access
Modeling crystal defects using defect informed neural networks
Ziduo Yang
1, 2
,
Xiaoqing Liu
2
,
Xiuying Zhang
2
,
Pengru Huang
3
,
Kostya S Novoselov
3
,
Lei Shen
2, 4
4
National University of Singapore (Chongqing) Research Institute, Chongqing, China
|
Publication type: Journal Article
Publication date: 2025-07-15
scimago Q1
wos Q1
SJR: 2.835
CiteScore: 16.3
Impact factor: 11.9
ISSN: 20573960
Abstract
Most AI-for-Materials research to date has focused on ideal crystals, whereas real-world materials inevitably contain defects that play a critical role in modern functional technologies. The defects break geometric symmetry and increase interaction complexity, posing particular challenges for traditional ML models. Here, we introduce Defect-Informed Equivariant Graph Neural Network (DefiNet), a model specifically designed to accurately capture defect-related interactions and geometric configurations in point-defect structures. DefiNet achieves near-DFT-level structural predictions in milliseconds using a single GPU. To validate its accuracy, we perform DFT relaxations using DefiNet-predicted structures as initial configurations and measure the residual ionic steps. For most defect structures, regardless of defect complexity or system size, only 3 ionic steps are required to reach the DFT-level ground state. Finally, comparisons with scanning transmission electron microscopy (STEM) images confirm DefiNet’s scalability and extrapolation beyond point defects, positioning it as a valuable tool for defect-focused materials research.
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Yang Z. et al. Modeling crystal defects using defect informed neural networks // npj Computational Materials. 2025. Vol. 11. No. 1. 229
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Yang Z., Liu X., Zhang X., Huang P., Novoselov K. S., Shen L. Modeling crystal defects using defect informed neural networks // npj Computational Materials. 2025. Vol. 11. No. 1. 229
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TY - JOUR
DO - 10.1038/s41524-025-01728-w
UR - https://www.nature.com/articles/s41524-025-01728-w
TI - Modeling crystal defects using defect informed neural networks
T2 - npj Computational Materials
AU - Yang, Ziduo
AU - Liu, Xiaoqing
AU - Zhang, Xiuying
AU - Huang, Pengru
AU - Novoselov, Kostya S
AU - Shen, Lei
PY - 2025
DA - 2025/07/15
PB - Springer Nature
IS - 1
VL - 11
SN - 2057-3960
ER -
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@article{2025_Yang,
author = {Ziduo Yang and Xiaoqing Liu and Xiuying Zhang and Pengru Huang and Kostya S Novoselov and Lei Shen},
title = {Modeling crystal defects using defect informed neural networks},
journal = {npj Computational Materials},
year = {2025},
volume = {11},
publisher = {Springer Nature},
month = {jul},
url = {https://www.nature.com/articles/s41524-025-01728-w},
number = {1},
pages = {229},
doi = {10.1038/s41524-025-01728-w}
}