Open Access

Bioinformatics, volume 26, issue 8, pages 1129-1130

BioNet: an R-Package for the functional analysis of biological networks

Daniela Beisser ¹

Gunnar W. Klau ²

Thomas Dandekar ²

T Müller ²

Marcus Dittrich ²

Hide authors affiliations Show authors affiliations: 2 affiliations

Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, 97074, Würzburg, Germany. |

Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, 97074 Würzburg, Germany and 2 Life Sciences group, CWI, Science Park 123, 1098 XG Amsterdam, The Netherlands |

Publication type: Journal Article

Publication date: 2010-02-25

Oxford University Press

Journal: Bioinformatics

Quartile SCImago

Quartile WOS

Impact factor: 5.8

ISSN: 13674803, 13674811, 14602059

DOI: 10.1093/bioinformatics/btq089

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Biochemistry

Computer Science Applications

Molecular Biology

Statistics and Probability

Computational Mathematics

Computational Theory and Mathematics

Abstract

Increasing quantity and quality of data in transcriptomics and interactomics create the need for integrative approaches to network analysis. Here, we present a comprehensive R-package for the analysis of biological networks including an exact and a heuristic approach to identify functional modules.The BioNet package provides an extensive framework for integrated network analysis in R. This includes the statistics for the integration of transcriptomic and functional data with biological networks, the scoring of nodes as well as methods for network search and visualization.The BioNet package and a tutorial are available from http://bionet.bioapps.biozentrum.uni-wuerzburg.de.

By date By citations

Top-30

Citations by journals

	2 4 6 8 10 12
Bioinformatics	Bioinformatics, 12, 6.12% Bioinformatics 12 publications, 6.12%
BMC Bioinformatics	BMC Bioinformatics, 8, 4.08% BMC Bioinformatics 8 publications, 4.08%
PLoS ONE	PLoS ONE, 8, 4.08% PLoS ONE 8 publications, 4.08%
Scientific Reports	Scientific Reports, 7, 3.57% Scientific Reports 7 publications, 3.57%
Oncology Letters	Oncology Letters, 6, 3.06% Oncology Letters 6 publications, 3.06%
Nucleic Acids Research	Nucleic Acids Research, 5, 2.55% Nucleic Acids Research 5 publications, 2.55%
Methods in Molecular Biology	Methods in Molecular Biology, 4, 2.04% Methods in Molecular Biology 4 publications, 2.04%
PLoS Computational Biology	PLoS Computational Biology, 4, 2.04% PLoS Computational Biology 4 publications, 2.04%
Oncotarget	Oncotarget, 3, 1.53% Oncotarget 3 publications, 1.53%
Molecular Medicine Reports	Molecular Medicine Reports, 3, 1.53% Molecular Medicine Reports 3 publications, 1.53%
BMC Systems Biology	BMC Systems Biology, 3, 1.53% BMC Systems Biology 3 publications, 1.53%
BMC Genomics	BMC Genomics, 3, 1.53% BMC Genomics 3 publications, 1.53%
Life Science Alliance	Life Science Alliance, 3, 1.53% Life Science Alliance 3 publications, 1.53%
Lecture Notes in Computer Science	Lecture Notes in Computer Science, 3, 1.53% Lecture Notes in Computer Science 3 publications, 1.53%
Journal of Immunology	Journal of Immunology, 2, 1.02% Journal of Immunology 2 publications, 1.02%
Journal of Computational Biology	Journal of Computational Biology, 2, 1.02% Journal of Computational Biology 2 publications, 1.02%
Tumori	Tumori, 2, 1.02% Tumori 2 publications, 1.02%
Frontiers in Genetics	Frontiers in Genetics, 2, 1.02% Frontiers in Genetics 2 publications, 1.02%
Nature Communications	Nature Communications, 2, 1.02% Nature Communications 2 publications, 1.02%
Computational and Structural Biotechnology Journal	Computational and Structural Biotechnology Journal, 2, 1.02% Computational and Structural Biotechnology Journal 2 publications, 1.02%
Gene	Gene, 2, 1.02% Gene 2 publications, 1.02%
Translational Cancer Research	Translational Cancer Research, 2, 1.02% Translational Cancer Research 2 publications, 1.02%
Molecular Systems Biology	Molecular Systems Biology, 1, 0.51% Molecular Systems Biology 1 publication, 0.51%
American Journal of Respiratory and Critical Care Medicine	American Journal of Respiratory and Critical Care Medicine, 1, 0.51% American Journal of Respiratory and Critical Care Medicine 1 publication, 0.51%
F1000Research	F1000Research, 1, 0.51% F1000Research 1 publication, 0.51%
Aging	Aging, 1, 0.51% Aging 1 publication, 0.51%
Medicine (United States)	Medicine (United States), 1, 0.51% Medicine (United States) 1 publication, 0.51%
Evolutionary Bioinformatics	Evolutionary Bioinformatics, 1, 0.51% Evolutionary Bioinformatics 1 publication, 0.51%
Cancer Informatics	Cancer Informatics, 1, 0.51% Cancer Informatics 1 publication, 0.51%
	2 4 6 8 10 12

Citations by publishers

	10 20 30 40 50 60
Springer Nature	Springer Nature, 57, 29.08% Springer Nature 57 publications, 29.08%
Elsevier	Elsevier, 21, 10.71% Elsevier 21 publications, 10.71%
Oxford University Press	Oxford University Press, 19, 9.69% Oxford University Press 19 publications, 9.69%
Cold Spring Harbor Laboratory	Cold Spring Harbor Laboratory, 18, 9.18% Cold Spring Harbor Laboratory 18 publications, 9.18%
Wiley	Wiley, 15, 7.65% Wiley 15 publications, 7.65%
Public Library of Science (PLoS)	Public Library of Science (PLoS), 13, 6.63% Public Library of Science (PLoS) 13 publications, 6.63%
Spandidos Publications	Spandidos Publications, 9, 4.59% Spandidos Publications 9 publications, 4.59%
Multidisciplinary Digital Publishing Institute (MDPI)	Multidisciplinary Digital Publishing Institute (MDPI), 6, 3.06% Multidisciplinary Digital Publishing Institute (MDPI) 6 publications, 3.06%
Impact Journals	Impact Journals, 4, 2.04% Impact Journals 4 publications, 2.04%
SAGE	SAGE, 4, 2.04% SAGE 4 publications, 2.04%
Frontiers Media S.A.	Frontiers Media S.A., 3, 1.53% Frontiers Media S.A. 3 publications, 1.53%
Rockefeller University Press	Rockefeller University Press, 3, 1.53% Rockefeller University Press 3 publications, 1.53%
Association for Computing Machinery (ACM)	Association for Computing Machinery (ACM), 3, 1.53% Association for Computing Machinery (ACM) 3 publications, 1.53%
The American Association of Immunologists	The American Association of Immunologists, 2, 1.02% The American Association of Immunologists 2 publications, 1.02%
Mary Ann Liebert	Mary Ann Liebert, 2, 1.02% Mary Ann Liebert 2 publications, 1.02%
AME Publishing Company	AME Publishing Company, 2, 1.02% AME Publishing Company 2 publications, 1.02%
American Thoracic Society	American Thoracic Society, 1, 0.51% American Thoracic Society 1 publication, 0.51%
F1000 Research	F1000 Research, 1, 0.51% F1000 Research 1 publication, 0.51%
Wolters Kluwer Health	Wolters Kluwer Health, 1, 0.51% Wolters Kluwer Health 1 publication, 0.51%
American Society for Biochemistry and Molecular Biology	American Society for Biochemistry and Molecular Biology, 1, 0.51% American Society for Biochemistry and Molecular Biology 1 publication, 0.51%
American Chemical Society (ACS)	American Chemical Society (ACS), 1, 0.51% American Chemical Society (ACS) 1 publication, 0.51%
Taylor & Francis	Taylor & Francis, 1, 0.51% Taylor & Francis 1 publication, 0.51%
American Association for the Advancement of Science (AAAS)	American Association for the Advancement of Science (AAAS), 1, 0.51% American Association for the Advancement of Science (AAAS) 1 publication, 0.51%
eLife Sciences Publications	eLife Sciences Publications, 1, 0.51% eLife Sciences Publications 1 publication, 0.51%
IEEE	IEEE, 1, 0.51% IEEE 1 publication, 0.51%
Cambridge University Press	Cambridge University Press, 1, 0.51% Cambridge University Press 1 publication, 0.51%
	10 20 30 40 50 60

We do not take into account publications without a DOI.
Statistics recalculated only for publications connected to researchers, organizations and labs registered on the platform.
Statistics recalculated weekly.

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GOST |

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GOST Copy

Beisser D. et al. BioNet: an R-Package for the functional analysis of biological networks // Bioinformatics. 2010. Vol. 26. No. 8. pp. 1129-1130.

GOST all authors (up to 50) Copy

Beisser D., Klau G. W., Dandekar T., Müller T., Dittrich M. BioNet: an R-Package for the functional analysis of biological networks // Bioinformatics. 2010. Vol. 26. No. 8. pp. 1129-1130.

RIS |

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RIS Copy

TY - JOUR

DO - 10.1093/bioinformatics/btq089

UR - https://doi.org/10.1093/bioinformatics/btq089

TI - BioNet: an R-Package for the functional analysis of biological networks

T2 - Bioinformatics

AU - Beisser, Daniela

AU - Klau, Gunnar W.

AU - Dandekar, Thomas

AU - Müller, T

AU - Dittrich, Marcus

PY - 2010

DA - 2010/02/25

PB - Oxford University Press

SP - 1129-1130

IS - 8

VL - 26

SN - 1367-4803

SN - 1367-4811

SN - 1460-2059

ER -

BibTex |

Cite this

BibTex Copy

@article{2010_Beisser,

author = {Daniela Beisser and Gunnar W. Klau and Thomas Dandekar and T Müller and Marcus Dittrich},

title = {BioNet: an R-Package for the functional analysis of biological networks},

journal = {Bioinformatics},

year = {2010},

volume = {26},

publisher = {Oxford University Press},

month = {feb},

url = {https://doi.org/10.1093/bioinformatics/btq089},

number = {8},

pages = {1129--1130},

doi = {10.1093/bioinformatics/btq089}

}

MLA

Cite this

MLA Copy

Beisser, Daniela, et al. “BioNet: an R-Package for the functional analysis of biological networks.” Bioinformatics, vol. 26, no. 8, Feb. 2010, pp. 1129-1130. https://doi.org/10.1093/bioinformatics/btq089.

Found error?

Publisher

Oxford University Press

Journal

Bioinformatics

Quartile SCImago

Quartile WOS

Impact factor

5.8

ISSN

13674803 (Print)
13674811 (Electronic)
14602059 (Electronic)