Open Access
Bioinformatics, volume 31, issue 8, pages 1325-1327
NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy
1
National Magnetics Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, Madison, WI 53706, USA.
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Publication type: Journal Article
Publication date: 2014-12-12
Journal:
Bioinformatics
Quartile SCImago
Q1
Quartile WOS
Q1
Impact factor: 5.8
ISSN: 13674803, 13674811, 14602059
PubMed ID:
25505092
Biochemistry
Computer Science Applications
Molecular Biology
Statistics and Probability
Computational Mathematics
Computational Theory and Mathematics
Abstract
Summary: SPARKY (Goddard and Kneller, SPARKY 3) remains the most popular software program for NMR data analysis, despite the fact that development of the package by its originators ceased in 2001. We have taken over the development of this package and describe NMRFAM-SPARKY, which implements new functions reflecting advances in the biomolecular NMR field. NMRFAM-SPARKY has been repackaged with current versions of Python and Tcl/Tk, which support new tools for NMR peak simulation and graphical assignment determination. These tools, along with chemical shift predictions from the PACSY database, greatly accelerate protein side chain assignments. NMRFAM-SPARKY supports automated data format interconversion for interfacing with a variety of web servers including, PECAN , PINE, TALOS-N, CS-Rosetta, SHIFTX2 and PONDEROSA-C/S. Availability and implementation: The software package, along with binary and source codes, if desired, can be downloaded freely from http://pine.nmrfam.wisc.edu/download_packages.html. Instruction manuals and video tutorials can be found at http://www.nmrfam.wisc.edu/nmrfam-sparky-distribution.htm. Contact: whlee@nmrfam.wisc.edu or markley@nmrfam.wisc.edu Supplementary information: Supplementary data are available at Bioinformatics online.
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- We do not take into account publications that without a DOI.
- Statistics recalculated only for publications connected to researchers, organizations and labs registered on the platform.
- Statistics recalculated weekly.
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Lee W., Tonelli M., MARKLEY J. M. NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy // Bioinformatics. 2014. Vol. 31. No. 8. pp. 1325-1327.
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Lee W., Tonelli M., MARKLEY J. M. NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy // Bioinformatics. 2014. Vol. 31. No. 8. pp. 1325-1327.
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TY - JOUR
DO - 10.1093/bioinformatics/btu830
UR - https://doi.org/10.1093%2Fbioinformatics%2Fbtu830
TI - NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy
T2 - Bioinformatics
AU - Lee, Woonghee
AU - Tonelli, Marco
AU - MARKLEY, JOHN M.
PY - 2014
DA - 2014/12/12 00:00:00
PB - Oxford University Press
SP - 1325-1327
IS - 8
VL - 31
PMID - 25505092
SN - 1367-4803
SN - 1367-4811
SN - 1460-2059
ER -
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@article{2014_Lee,
author = {Woonghee Lee and Marco Tonelli and JOHN M. MARKLEY},
title = {NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy},
journal = {Bioinformatics},
year = {2014},
volume = {31},
publisher = {Oxford University Press},
month = {dec},
url = {https://doi.org/10.1093%2Fbioinformatics%2Fbtu830},
number = {8},
pages = {1325--1327},
doi = {10.1093/bioinformatics/btu830}
}
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MLA
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Lee, Woonghee, et al. “NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.” Bioinformatics, vol. 31, no. 8, Dec. 2014, pp. 1325-1327. https://doi.org/10.1093%2Fbioinformatics%2Fbtu830.