Evaluation of the TB-Biochip Oligonucleotide Microarray System for Rapid Detection of Rifampin Resistance in Mycobacterium tuberculosis
Тип публикации: Journal Article
Дата публикации: 2006-07-09
scimago Q1
wos Q1
БС1
SJR: 1.878
CiteScore: 12.1
Impact factor: 5.4
ISSN: 00951137, 1098660X
PubMed ID:
16825352
Microbiology (medical)
Краткое описание
ABSTRACT
The TB-Biochip oligonucleotide microarray system is a rapid system to detect mutations associated with rifampin (RIF) resistance in mycobacteria. After optimizing the system with 29 laboratory-generated rifampin-resistant mutants of Mycobacterium tuberculosis , we evaluated the performance of this test using 75 clinical isolates of Mycobacterium tuberculosis . With this small sample set, the TB-Biochip system displayed a sensitivity of 80% and a specificity of 100% relative to conventional drug susceptibility testing results for RIF resistance. For these samples (∼50% tested positive), the positive predictive value was 100% and the negative predictive value was 85%. Four of the seven observed discrepancies were attributed to rare and new mutations not represented in the microarray, while three of the strains with discrepant results did not carry mutations in the RIF resistance-determining region. The results of this study confirm the utility of the system for rapid detection of RIF resistance and suggest approaches to increasing its sensitivity.
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ГОСТ
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Caoili J. C. et al. Evaluation of the TB-Biochip Oligonucleotide Microarray System for Rapid Detection of Rifampin Resistance in Mycobacterium tuberculosis // Journal of Clinical Microbiology. 2006. Vol. 44. No. 7. pp. 2378-2381.
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Caoili J. C., Mayorova A., Sikes D., Hickman L., Plikaytis B. B., Shinnick T. M. Evaluation of the TB-Biochip Oligonucleotide Microarray System for Rapid Detection of Rifampin Resistance in Mycobacterium tuberculosis // Journal of Clinical Microbiology. 2006. Vol. 44. No. 7. pp. 2378-2381.
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TY - JOUR
DO - 10.1128/jcm.00439-06
UR - https://doi.org/10.1128/jcm.00439-06
TI - Evaluation of the TB-Biochip Oligonucleotide Microarray System for Rapid Detection of Rifampin Resistance in Mycobacterium tuberculosis
T2 - Journal of Clinical Microbiology
AU - Caoili, Janice C
AU - Mayorova, Angelina
AU - Sikes, David
AU - Hickman, Laura
AU - Plikaytis, Bonnie B
AU - Shinnick, Thomas M.
PY - 2006
DA - 2006/07/09
PB - American Society for Microbiology
SP - 2378-2381
IS - 7
VL - 44
PMID - 16825352
SN - 0095-1137
SN - 1098-660X
ER -
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BibTex (до 50 авторов)
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@article{2006_Caoili,
author = {Janice C Caoili and Angelina Mayorova and David Sikes and Laura Hickman and Bonnie B Plikaytis and Thomas M. Shinnick},
title = {Evaluation of the TB-Biochip Oligonucleotide Microarray System for Rapid Detection of Rifampin Resistance in Mycobacterium tuberculosis},
journal = {Journal of Clinical Microbiology},
year = {2006},
volume = {44},
publisher = {American Society for Microbiology},
month = {jul},
url = {https://doi.org/10.1128/jcm.00439-06},
number = {7},
pages = {2378--2381},
doi = {10.1128/jcm.00439-06}
}
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MLA
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Caoili, Janice C., et al. “Evaluation of the TB-Biochip Oligonucleotide Microarray System for Rapid Detection of Rifampin Resistance in Mycobacterium tuberculosis.” Journal of Clinical Microbiology, vol. 44, no. 7, Jul. 2006, pp. 2378-2381. https://doi.org/10.1128/jcm.00439-06.