Open Access
Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience
David Lopatto
1
,
Anne G. Rosenwald
2
,
Justin R. DiAngelo
3
,
Amy T. Hark
4
,
Matthew Skerritt
5
,
Matthew Wawersik
6
,
Anna K. Allen
7
,
Consuelo Alvarez
8
,
Sara Anderson
9
,
Cindy Arrigo
10
,
Andrew Arsham
11
,
Daron Barnard
12
,
Christopher Bazinet
13
,
James E.J. Bedard
14
,
Indrani Bose
15
,
John M Braverman
16
,
Martin G. Burg
17
,
Rebecca C. Burgess
18
,
Paula Croonquist
19
,
Chunguang Du
20
,
Sondra Dubowsky
21
,
Heather Eisler
22
,
Matthew A Escobar
23
,
Michael Foulk
24
,
Emily Furbee
25
,
Thomas Giarla
26
,
Rivka L. Glaser
18
,
Anya L Goodman
27
,
Yuying Gosser
28
,
Adam Haberman
29
,
Charles Hauser
30
,
Shan Hays
31
,
Carina E Howell
32
,
Jennifer Jemc
33
,
M Logan Johnson
34
,
Christopher J. Jones
35
,
Lisa Kadlec
36
,
Jacob D Kagey
37
,
Kimberly L Keller
38
,
Jennifer Kennell
39
,
S Catherine Silver Key
40
,
Adam J Kleinschmit
41
,
Melissa Kleinschmit
41
,
Nighat P Kokan
42
,
Olga Ruiz Kopp
43
,
Meg M Laakso
44
,
Judith Leatherman
45
,
Lindsey J Long
46
,
Mollie Manier
47
,
Juan C Martinez Cruzado
48
,
Luis F Matos
49
,
Amie Jo Mcclellan
50
,
Gerard Mcneil
51
,
Evan Merkhofer
52
,
Vida Mingo
53
,
Hemlata Mistry
54
,
Elizabeth Mitchell
21
,
Nathan T. Mortimer
55
,
Debaditya Mukhopadhyay
56
,
Jennifer Leigh Myka
57
,
Alexis Nagengast
58
,
Paul Overvoorde
59
,
Don Paetkau
60
,
Leocadia Paliulis
61
,
Susan Parrish
62
,
Mary Lai Preuss
63
,
James V. Price
43
,
Nicholas A. Pullen
45
,
Catherine Reinke
64
,
Dennis Revie
65
,
Srebrenka Robic
66
,
Jennifer A Roecklein Canfield
67
,
Michael R Rubin
68
,
Takrima Sadikot
69
,
Jamie Siders Sanford
70
,
María Santisteban
71
,
Kenneth Saville
72
,
Stephanie Schroeder
63
,
Christopher D. Shaffer
73
,
Karim A. Sharif
74
,
Diane E Sklensky
75
,
Chiyedza Small
76
,
Mary Smith
77
,
Sheryl Smith
78
,
Rebecca Spokony
79
,
Aparna Sreenivasan
80
,
Joyce Stamm
81
,
Rachel Sterne-Marr
26
,
Katherine C Teeter
82
,
Justin Thackeray
83
,
Jeffrey S. Thompson
84
,
Stephanie Toering Peters
85
,
Melanie Van Stry
75
,
Norma Velazquez Ulloa
86
,
Cindy Wolfe
87
,
James Youngblom
88
,
Brian Yowler
89
,
Leming Zhou
90
,
Janie Brennan
91
,
Jeremy Buhler
92
,
Wilson Leung
73
,
Laura K Reed
93
,
Sarah C.R Elgin
73
1
Center for Teaching, Learning and Assessment, Grinnell College, Grinnell, IA 50112, USA
|
4
Biology, Muhlenberg College, Allentown, PA 18104, USA
|
5
Science, SUNY Corning Community College, Corning, NY 14830, USA
|
10
Biology, New Jersey City University, Jersey City, NJ 07305, USA
|
13
Biological Sciences, St. John’s University, Queens, NY 11439, USA
|
14
Biology, University of the Fraser Valley, Abbotsford, BC, V2S 7M8, Canada
|
16
Biology, Saint Joseph’s University, Philadelphia, PA 19131, USA
|
18
Biological Sciences, Stevenson University, Owings Mills, MD 21117, USA
|
19
Biology, Anoka-Ramsey Community College, Coon Rapids, MN 55433, USA
|
21
Biology, McLennan Community College, Waco, TX 76708, USA
|
24
Biology, Mercyhurst University, Erie, PA 16546, USA
|
25
Biology, Washington and Jefferson College, Washington, PA 15301, USA
|
26
Biology, Siena College, Loudonville, NY 12211, USA
|
27
Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, CA 93407, USA
|
28
Student Research and Scholarship, City College CUNY, New York, NY 10031, USA
|
29
Biology, University of San Diego, San Diego, CA 92110, USA
|
30
Biology, St. Edward’s University, Austin, TX 78704, USA
|
31
Biology, Western Colorado University, Gunnison, CO 81231, USA
|
34
Biology, Notre Dame College, South Euclid, OH 44121, USA
|
35
Biological Sciences, Moravian College, Bethlehem, PA 18018, USA
|
36
Biology, Wilkes University, Wilkes-Barre, PA 18766, USA
|
37
Biology, University of Detroit Mercy, Detroit, MI 48221, USA
|
38
Biology, William Woods University, Fulton, MO 65251, USA
|
39
Biology, Vassar College, Poughkeepsie, NY 12604, USA
|
41
Natural and Applied Science, University of Dubuque, Dubuque, IA 52001, USA
|
42
Natural Sciences, Cardinal Stritch University, Milwaukee, WI 53217, USA
|
44
Biology, Eastern University, St. Davids, PA 19087, USA
|
45
Biological Sciences, University of Northern Colorado, Greeley, CO 80639, USA
|
50
Science and Mathematics, Bennington College, Bennington, VT 05201, USA
|
51
Biology, York College / CUNY, Jamaica, NY 11451, USA
|
52
Natural Sciences, Mount Saint Mary College, Newbergh, NY 12550, USA
|
53
Biology, Columbia College, Columbia, SC 29203, USA
|
57
Biology, Gateway Community and Technical College, Florence, KY 41042, USA
|
59
Biology, Macalester College, St. Paul, MN 55105, USA
|
62
Biology, McDaniel College, Westminster, MD 21157, USA
|
64
Biology, Linfield College, McMinnville, OR 97128, USA
|
65
Biology, California Lutheran University, Thousand Oaks, CA 91360, USA
|
66
Biology, Agnes Scott College, Decatur, GA 30030, USA
|
67
Chemistry, Simmons College, Boston, MA 02115, USA
|
70
Biology, Ohio Northern University, Ada, OH 45810, USA
|
72
Biology, Albion College, Albion, MI 49224, USA
|
74
Biology, Massasoit Community College, Brockton, MA 02302, USA
|
75
Biology, Lane College, Jackson, TN 38301, USA
|
76
Biology, Medgar Evers College, CUNY, Brooklyn, NY 11225, USA
|
77
Biology, North Carolina A & T State University, Greensboro, NC 27411, USA
|
81
Biology, University of Evansville, Evansville, IN 47722, USA
|
84
Biology, Denison University, Granville, OH 43023, USA
|
85
Biology, Wartburg College, Waverly, IA 50677, USA
|
86
Biology, Lewis & Clark College, Portland, OR 97219, USA
|
87
Biology, Kentucky Wesleyan College, Owensboro, KY 42301, USA
|
89
Biology, Grove City College, Grove City, PA 16127, USA
|
Publication type: Journal Article
Publication date: 2020-01-09
scimago Q2
wos Q3
SJR: 0.518
CiteScore: 3.2
Impact factor: 1.5
ISSN: 19357877, 19357885
PubMed ID:
32148609
General Biochemistry, Genetics and Molecular Biology
General Agricultural and Biological Sciences
General Immunology and Microbiology
Education
Abstract
A hallmark of the research experience is encountering difficulty and working through those challenges to achieve success. This ability is essential to being a successful scientist, but replicating such challenges in a teaching setting can be difficult. The Genomics Education Partnership (GEP) is a consortium of faculty who engage their students in a genomics Course-Based Undergraduate Research Experience (CURE). Students participate in genome annotation, generating gene models using multiple lines of experimental evidence. Our observations suggested that the students’ learning experience is continuous and recursive, frequently beginning with frustration but eventually leading to success as they come up with defendable gene models. In order to explore our “formative frustration” hypothesis, we gathered data from faculty via a survey, and from students via both a general survey and a set of student focus groups. Upon analyzing these data, we found that all three datasets mentioned frustration and struggle, as well as learning and better understanding of the scientific process. Bioinformatics projects are particularly well suited to the process of iteration and refinement because iterations can be performed quickly and are inexpensive in both time and money. Based on these findings, we suggest that a dynamic of “formative frustration” is an important aspect for a successful CURE.
Found
Nothing found, try to update filter.
Found
Nothing found, try to update filter.
Top-30
Journals
|
1
2
3
4
5
6
7
8
|
|
|
Journal of Microbiology and Biology Education
8 publications, 32%
|
|
|
F1000Research
2 publications, 8%
|
|
|
CBE Life Sciences Education
2 publications, 8%
|
|
|
International Journal of STEM Education
1 publication, 4%
|
|
|
PLoS ONE
1 publication, 4%
|
|
|
Matter
1 publication, 4%
|
|
|
mBio
1 publication, 4%
|
|
|
bioRxiv
1 publication, 4%
|
|
|
Behavior Genetics
1 publication, 4%
|
|
|
Biology Methods and Protocols
1 publication, 4%
|
|
|
Studies in Higher Education
1 publication, 4%
|
|
|
Journal of Chemical Education
1 publication, 4%
|
|
|
Cognitive Science
1 publication, 4%
|
|
|
1
2
3
4
5
6
7
8
|
Publishers
|
1
2
3
4
5
6
7
8
9
|
|
|
American Society for Microbiology
9 publications, 36%
|
|
|
Springer Nature
2 publications, 8%
|
|
|
Elsevier
2 publications, 8%
|
|
|
Cold Spring Harbor Laboratory
2 publications, 8%
|
|
|
F1000 Research
2 publications, 8%
|
|
|
American Society for Cell Biology (ASCB)
2 publications, 8%
|
|
|
Public Library of Science (PLoS)
1 publication, 4%
|
|
|
Oxford University Press
1 publication, 4%
|
|
|
Taylor & Francis
1 publication, 4%
|
|
|
American Chemical Society (ACS)
1 publication, 4%
|
|
|
Wiley
1 publication, 4%
|
|
|
Institute of Electrical and Electronics Engineers (IEEE)
1 publication, 4%
|
|
|
1
2
3
4
5
6
7
8
9
|
- We do not take into account publications without a DOI.
- Statistics recalculated weekly.
Are you a researcher?
Create a profile to get free access to personal recommendations for colleagues and new articles.
Metrics
25
Total citations:
25
Citations from 2024:
9
(36%)
Cite this
GOST |
RIS |
BibTex
Cite this
GOST
Copy
Lopatto D. et al. Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience // Journal of Microbiology and Biology Education. 2020. Vol. 21. No. 1.
GOST all authors (up to 50)
Copy
Lopatto D. et al. Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience // Journal of Microbiology and Biology Education. 2020. Vol. 21. No. 1.
Cite this
RIS
Cite this
BibTex (up to 50 authors)
Copy
@article{2020_Lopatto,
author = {David Lopatto and Anne G. Rosenwald and Justin R. DiAngelo and Amy T. Hark and Matthew Skerritt and Matthew Wawersik and Anna K. Allen and Consuelo Alvarez and Sara Anderson and Cindy Arrigo and Andrew Arsham and Daron Barnard and Christopher Bazinet and James E.J. Bedard and Indrani Bose and John M Braverman and Martin G. Burg and Rebecca C. Burgess and Paula Croonquist and Chunguang Du and Sondra Dubowsky and Heather Eisler and Matthew A Escobar and Michael Foulk and Emily Furbee and Thomas Giarla and Rivka L. Glaser and Anya L Goodman and Yuying Gosser and Adam Haberman and Charles Hauser and Shan Hays and Carina E Howell and Jennifer Jemc and M Logan Johnson and Christopher J. Jones and Lisa Kadlec and Jacob D Kagey and Kimberly L Keller and Jennifer Kennell and S Catherine Silver Key and Adam J Kleinschmit and Melissa Kleinschmit and Nighat P Kokan and Olga Ruiz Kopp and Meg M Laakso and Judith Leatherman and Lindsey J Long and Mollie Manier and Juan C Martinez Cruzado and others},
title = {Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience},
journal = {Journal of Microbiology and Biology Education},
year = {2020},
volume = {21},
publisher = {American Society for Microbiology},
month = {jan},
url = {https://doi.org/10.1128/jmbe.v21i1.2005},
number = {1},
doi = {10.1128/jmbe.v21i1.2005}
}