Open Access

BMC Biology, volume 5, issue 1, publication number 34

FishNet: an online database of zebrafish anatomy

Bryson-Richardson Robert J ¹

Berger Silke ¹

Schilling Thomas F. ²

HALL THOMAS E. ¹

Cole Nicholas J. ¹

Gibson Abigail J ¹

Sharpe James ³

Currie Peter D ^{1, 4, 5}

Hide authors affiliations Show authors affiliations: 5 affiliations

The Victor Chang Cardiac Research Institute, Darlinghurst, Australia |

Department of Developmental and Cell Biology, School of Biological Sciences, University of California, Irvine, USA |

Centre for Genomic Regulation, Barcelona, Spain |

⁴

School of Biotechnology & Biomolecular Sciences, University of New South Wales, Sydney, Australia |

⁵

St Vincent's Clinical School, University of New South Wales, Sydney, Australia |

Publication type: Journal Article

Publication date: 2007-08-17

Springer Nature

Journal: BMC Biology

Quartile SCImago

Quartile WOS

Impact factor: 5.4

ISSN: 17417007

DOI: 10.1186/1741-7007-5-34

Copy DOI

PubMed ID: 17705855

General Biochemistry, Genetics and Molecular Biology

Cell Biology

Structural Biology

Plant Science

Biotechnology

General Agricultural and Biological Sciences

Developmental Biology

Physiology

Ecology, Evolution, Behavior and Systematics

Abstract

BackgroundOver the last two decades, zebrafish have been established as a genetically versatile model system for investigating many different aspects of vertebrate developmental biology. With the credentials of zebrafish as a developmental model now well recognized, the emerging new opportunity is the wider application of zebrafish biology to aspects of human disease modelling. This rapidly increasing use of zebrafish as a model for human disease has necessarily generated interest in the anatomy of later developmental phases such as the larval, juvenile, and adult stages, during which many of the key aspects of organ morphogenesis and maturation take place. Anatomical resources and references that encompass these stages are non-existent in zebrafish and there is therefore an urgent need to understand how different organ systems and anatomical structures develop throughout the life of the fish.ResultsTo overcome this deficit we have utilized the technique of optical projection tomography to produce three-dimensional (3D) models of larval fish. In order to view and display these models we have created FishNet http://www.fishnet.org.au, an interactive reference of zebrafish anatomy spanning the range of zebrafish development from 24 h until adulthood.ConclusionFishNet contains more than 36 000 images of larval zebrafish, with more than 1 500 of these being annotated. The 3D models can be manipulated on screen or virtually sectioned. This resource represents the first complete embryo to adult atlas for any species in 3D.

By date By citations

Citations by journals

	1 2 3
Scientific Reports	Scientific Reports, 3, 6% Scientific Reports 3 publications, 6%
BMC Developmental Biology	BMC Developmental Biology, 2, 4% BMC Developmental Biology 2 publications, 4%
Physics in Medicine and Biology	Physics in Medicine and Biology, 2, 4% Physics in Medicine and Biology 2 publications, 4%
Biomedical Optics Express	Biomedical Optics Express, 2, 4% Biomedical Optics Express 2 publications, 4%
Doklady Biochemistry and Biophysics	Doklady Biochemistry and Biophysics, 1, 2% Doklady Biochemistry and Biophysics 1 publication, 2%
Development (Cambridge)	Development (Cambridge), 1, 2% Development (Cambridge) 1 publication, 2%
Sexual Development	Sexual Development, 1, 2% Sexual Development 1 publication, 2%
Zebrafish	Zebrafish, 1, 2% Zebrafish 1 publication, 2%
Optical Engineering	Optical Engineering, 1, 2% Optical Engineering 1 publication, 2%
Frontiers in Pharmacology	Frontiers in Pharmacology, 1, 2% Frontiers in Pharmacology 1 publication, 2%
Frontiers in Neuroanatomy	Frontiers in Neuroanatomy, 1, 2% Frontiers in Neuroanatomy 1 publication, 2%
PLoS ONE	PLoS ONE, 1, 2% PLoS ONE 1 publication, 2%
Current Opinion in Genetics and Development	Current Opinion in Genetics and Development, 1, 2% Current Opinion in Genetics and Development 1 publication, 2%
Marine Genomics	Marine Genomics, 1, 2% Marine Genomics 1 publication, 2%
Biosensors and Bioelectronics	Biosensors and Bioelectronics, 1, 2% Biosensors and Bioelectronics 1 publication, 2%
Developmental Biology	Developmental Biology, 1, 2% Developmental Biology 1 publication, 2%
Translational Research	Translational Research, 1, 2% Translational Research 1 publication, 2%
NMR in Biomedicine	NMR in Biomedicine, 1, 2% NMR in Biomedicine 1 publication, 2%
Journal of Biophotonics	Journal of Biophotonics, 1, 2% Journal of Biophotonics 1 publication, 2%
Developmental Dynamics	Developmental Dynamics, 1, 2% Developmental Dynamics 1 publication, 2%
Birth Defects Research Part B Developmental and Reproductive Toxicology	Birth Defects Research Part B Developmental and Reproductive Toxicology, 1, 2% Birth Defects Research Part B Developmental and Reproductive Toxicology 1 publication, 2%
Marine Ecology	Marine Ecology, 1, 2% Marine Ecology 1 publication, 2%
Chemical Reviews	Chemical Reviews, 1, 2% Chemical Reviews 1 publication, 2%
Organogenesis	Organogenesis, 1, 2% Organogenesis 1 publication, 2%
Connective Tissue Research	Connective Tissue Research, 1, 2% Connective Tissue Research 1 publication, 2%
IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control	IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 1, 2% IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control 1 publication, 2%
IEEE Transactions on Industrial Electronics	IEEE Transactions on Industrial Electronics, 1, 2% IEEE Transactions on Industrial Electronics 1 publication, 2%
IEEE/ASME Transactions on Mechatronics	IEEE/ASME Transactions on Mechatronics, 1, 2% IEEE/ASME Transactions on Mechatronics 1 publication, 2%
Bioinformatics	Bioinformatics, 1, 2% Bioinformatics 1 publication, 2%
	1 2 3

Citations by publishers

	1 2 3 4 5 6
Springer Nature	Springer Nature, 6, 12% Springer Nature 6 publications, 12%
Elsevier	Elsevier, 5, 10% Elsevier 5 publications, 10%
Wiley	Wiley, 5, 10% Wiley 5 publications, 10%
IEEE	IEEE, 4, 8% IEEE 4 publications, 8%
Frontiers Media S.A.	Frontiers Media S.A., 2, 4% Frontiers Media S.A. 2 publications, 4%
IOP Publishing	IOP Publishing, 2, 4% IOP Publishing 2 publications, 4%
Taylor & Francis	Taylor & Francis, 2, 4% Taylor & Francis 2 publications, 4%
Optical Society of America	Optical Society of America, 2, 4% Optical Society of America 2 publications, 4%
Hindawi Limited	Hindawi Limited, 2, 4% Hindawi Limited 2 publications, 4%
Pleiades Publishing	Pleiades Publishing, 1, 2% Pleiades Publishing 1 publication, 2%
The Company of Biologists	The Company of Biologists, 1, 2% The Company of Biologists 1 publication, 2%
S. Karger AG	S. Karger AG, 1, 2% S. Karger AG 1 publication, 2%
Mary Ann Liebert	Mary Ann Liebert, 1, 2% Mary Ann Liebert 1 publication, 2%
SPIE	SPIE, 1, 2% SPIE 1 publication, 2%
Public Library of Science (PLoS)	Public Library of Science (PLoS), 1, 2% Public Library of Science (PLoS) 1 publication, 2%
American Chemical Society (ACS)	American Chemical Society (ACS), 1, 2% American Chemical Society (ACS) 1 publication, 2%
Oxford University Press	Oxford University Press, 1, 2% Oxford University Press 1 publication, 2%
Cold Spring Harbor Laboratory	Cold Spring Harbor Laboratory, 1, 2% Cold Spring Harbor Laboratory 1 publication, 2%
	1 2 3 4 5 6

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Bryson-Richardson R. J. et al. FishNet: an online database of zebrafish anatomy // BMC Biology. 2007. Vol. 5. No. 1. 34

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Bryson-Richardson R. J., Berger S., Schilling T. F., HALL T. E., Cole N. J., Gibson A. J., Sharpe J., Currie P. D. FishNet: an online database of zebrafish anatomy // BMC Biology. 2007. Vol. 5. No. 1. 34

RIS |

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RIS Copy

TY - JOUR

DO - 10.1186/1741-7007-5-34

UR - https://doi.org/10.1186%2F1741-7007-5-34

TI - FishNet: an online database of zebrafish anatomy

T2 - BMC Biology

AU - Bryson-Richardson, Robert J

AU - Berger, Silke

AU - Schilling, Thomas F.

AU - HALL, THOMAS E.

AU - Cole, Nicholas J.

AU - Gibson, Abigail J

AU - Sharpe, James

AU - Currie, Peter D

PY - 2007

DA - 2007/08/17 00:00:00

PB - Springer Nature

IS - 1

VL - 5

PMID - 17705855

SN - 1741-7007

ER -

BibTex

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@article{2007_Bryson-Richardson,

author = {Robert J Bryson-Richardson and Silke Berger and Thomas F. Schilling and THOMAS E. HALL and Nicholas J. Cole and Abigail J Gibson and James Sharpe and Peter D Currie},

title = {FishNet: an online database of zebrafish anatomy},

journal = {BMC Biology},

year = {2007},

volume = {5},

publisher = {Springer Nature},

month = {aug},

url = {https://doi.org/10.1186%2F1741-7007-5-34},

number = {1},

doi = {10.1186/1741-7007-5-34}

}

Found error?

Publisher

Springer Nature

Journal

BMC Biology

Quartile SCImago

Quartile WOS

Impact factor

5.4

ISSN

17417007 (Print)