Design and Synthesis of Novel Phthalazine Scaffolds Linked to 1,3,4–oxadiazolyl–1,2,3–triazoles as Potent Anticancer Agents: A Computational Docking Analysis

Ananda Kumar Dunga 1
Tejeswara Rao Allaka 2
Yugandhar Kethavarapu 3
Sunil Kumar Nechipadappu 4
Pradeep Pothana 5
Ravi Kumar Ganta 6
Pilli VVN Kishore 1
Publication typeJournal Article
Publication date2025-01-13
scimago Q3
wos Q4
SJR0.310
CiteScore1.8
Impact factor1.6
ISSN15701808, 1875628X
Drug Discovery
Pharmaceutical Science
Molecular Medicine
Abstract
Background and objective:

A study on the chemical and biological properties of molecules simultaneously comprising various heterocycles, such as fused 1,3,4–oxadiazole and 1,2,3–triazoles, has been conducted as part of our ongoing research in the field of medicinal and organic chemistry. In the present study, novel 1,3,4-oxadiazoles and 1,2,3-triazoles incorporating a phthalazine ring have been synthesized and evaluated for their anticancer activity and docking analysis.

Methods:

In this study, we performed ligand–based pharmacophore modeling as a promising design strategy of substituted phthalazin–1(2H)–one–1,3,4–oxadiazole acetamides (4); 1,2,3–triazole–1,3,4–oxadiazolyl)phthalazin-1(2H)-one (5) were synthesized from key intermediate 2-((5-mercapto-1,3,4-oxadiazol-2-yl)methyl)-4-methylphthalazin-1(2H)-one 2. The prepared compounds were characterized by proton and carbon nuclear magnetic resonance spectroscopy, infrared, elemental analysis, and mass spectroscopy. Synthesized scaffolds were screened for their anticancer activity against three cell lines, MCF-7, T-47D, and MDA-MB-231, by MTT assay. The prepared ligands were docked by using the input protocols, like RCSB, AutoDock 4.2, ACD ChemSketch, Open Babel, and SwissADME.

Results:

The final compound 5f exhibited excellent activity (IC50 = 10.21 ± 2.2, 7.53 ± 0.1 µM) against T-47D and MCF-7 cancer cell lines, respectively, and compounds 4b and 5b showed the highest % growth of inhibition (61.25 ± 0.52, 62.48 ± 0.20 µg/mL) against T-47D and MCF-7 cell lines, which has been found to be equivalent to that reported by the standard cisplatin. The prepared ligand 5f exhibited greatest bonding with amino acids AlaX:191, MetX:193, ValX:196, ThrX:140, PheX:192, TyrX:155, AsnX:90, LysX:159, LeuX:95, and IleX:14, with a docking score of –11.53 Kcal/mol, respectively. These compounds were further evaluated for their ADMET and physicochemical properties by using SwissADME.

Conclusion:

Phthalazine with 1,3,4–oxadiazole substituents and 1,2,3–triazoles containing 1,3,4–oxadiazole ring displayed excellent anticancer activity; some interesting relationship has also been evidenced between the synthesised structures and their antimicrobial activity and docking studies. In light of all the above findings, it can be concluded that these molecules may serve as lead molecules for further synthetic and biological evaluation.

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Dunga A. K. et al. Design and Synthesis of Novel Phthalazine Scaffolds Linked to 1,3,4–oxadiazolyl–1,2,3–triazoles as Potent Anticancer Agents: A Computational Docking Analysis // Letters in Drug Design and Discovery. 2025. Vol. 20.
GOST all authors (up to 50) Copy
Dunga A. K., Allaka T. R., Kethavarapu Y., Nechipadappu S. K., Pothana P., Ganta R. K., Kishore P. V. Design and Synthesis of Novel Phthalazine Scaffolds Linked to 1,3,4–oxadiazolyl–1,2,3–triazoles as Potent Anticancer Agents: A Computational Docking Analysis // Letters in Drug Design and Discovery. 2025. Vol. 20.
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TY - JOUR
DO - 10.2174/1570180820666230606110125
UR - https://www.eurekaselect.com/217685/article
TI - Design and Synthesis of Novel Phthalazine Scaffolds Linked to 1,3,4–oxadiazolyl–1,2,3–triazoles as Potent Anticancer Agents: A Computational Docking Analysis
T2 - Letters in Drug Design and Discovery
AU - Dunga, Ananda Kumar
AU - Allaka, Tejeswara Rao
AU - Kethavarapu, Yugandhar
AU - Nechipadappu, Sunil Kumar
AU - Pothana, Pradeep
AU - Ganta, Ravi Kumar
AU - Kishore, Pilli VVN
PY - 2025
DA - 2025/01/13
PB - Elsevier
VL - 20
SN - 1570-1808
SN - 1875-628X
ER -
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@article{2025_Dunga,
author = {Ananda Kumar Dunga and Tejeswara Rao Allaka and Yugandhar Kethavarapu and Sunil Kumar Nechipadappu and Pradeep Pothana and Ravi Kumar Ganta and Pilli VVN Kishore},
title = {Design and Synthesis of Novel Phthalazine Scaffolds Linked to 1,3,4–oxadiazolyl–1,2,3–triazoles as Potent Anticancer Agents: A Computational Docking Analysis},
journal = {Letters in Drug Design and Discovery},
year = {2025},
volume = {20},
publisher = {Elsevier},
month = {jan},
url = {https://www.eurekaselect.com/217685/article},
doi = {10.2174/1570180820666230606110125}
}