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Molecular phylogenetic analyses reveal multiple long-distance dispersal events and extensive cryptic speciation in Nervilia (Orchidaceae), an isolated basal Epidendroid genus

Stephan W. Gale 1
Jihong Li 1
Somran Suddee 2
Paweena Traiperm 3
Craig I Peter 4
Tomas Buruwate 5
Benjamin J Crain 6
Melissa K. McCormick 6
Dennis F. Whigham 6
Arni Musthofa 7
Khyanjeet Gogoi 8
Katsura Ito 9
Yukio Minamiya 10
Tatsuya Fukuda 11
Sven Landrein 1
Tomohisa Yukawa 12
1
 
Flora Conservation Department, Kadoorie Farm and Botanic Garden, Hong Kong, Hong Kong SAR, China
2
 
Department of National Parks, Forest Herbarium, Wildlife and Plant Conservation, Bangkok, Thailand
5
 
Mariri Environmental Centre L5 South Concession, Niassa Special Reserve, Mozambique
6
 
North American Orchid Conservation Center, Smithsonian Environmental Research Center, Edgewater, MD, United States
8
 
The Orchid Society of Eastern Himalaya, Daisa Bordoloi Nagar, Tinsukia, Assam, India
10
 
Tochigi Prefectural Museum, Utsunomiya, Japan
12
 
Tsukuba Botanical Garden, National Museum of Nature and Science, Tsukuba, Japan
Publication typeJournal Article
Publication date2025-02-20
scimago Q1
wos Q1
SJR1.163
CiteScore8.8
Impact factor4.8
ISSN1664462X
Abstract
Introduction

The terrestrial orchid genus Nervilia is diagnosed by its hysteranthous pattern of emergence but is nested among leafless myco-heterotrophic lineages in the lower Epidendroideae. Comprising ca. 80 species distributed across Africa, Asia and Oceania, the genus remains poorly known and plagued by vague and overlapping species circumscriptions, especially within each of a series of taxonomically intractable species complexes. Prior small-scale, exploratory molecular phylogenetic analyses have revealed the existence of cryptic species, but little is otherwise understood of origin, the scale and timing of its biogeographic spread, or the palaeoclimatic factors that have shaped its ecology and given rise to contemporary patterns of occurrence.

Methods

Here, we sample widely throughout the generic range, including 45 named taxa and multiple accessions referable to several widespread ‘macrospecies’, as well as material of equivocal identity and probable undescribed status, for the first time enabling an evaluation of taxonomic boundaries at both species and sectional level. Using nuclear (ITS) and plastid (matK, trnL-F) sequence data, we conduct phylogenetic (maximum parsimony and Bayesian inference) and ancestral area analysis to infer relationships and resolve probable origin and colonisation routes.

Results

The genus is strongly supported as monophyletic, as are each of its three sections. However, the number of flowers in the inflorescence and other floral characters are poor indicators of sectional affinity. Dated ancestral area analysis supports an origin in Africa in the Early Oligocene, with spread eastwards to Asia occurring in the Late Miocene, plausibly via the Gomphotherium land bridge at a time when it supported woodland and savanna ecosystems.

Discussion

Taxonomic radiation in Asia within the last 8 million years ties in with dramatic Himalayan-Tibetan Plateau uplift and associated intensification of the Asia monsoon. Multiple long-range migrations appear to have occurred thereafter, as the genus colonised Malesia and Oceania from the Pliocene onwards. The bulk of contemporary species diversity is relatively recent, potentially explaining the ubiquity of cryptic speciation, which leaves numerous species overlooked and unnamed. Widespread disjunct species pairs hint at high mobility across continents, extinction and a history of climate-induced vicariance. Persistent taxonomic challenges are highlighted.

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Gale S. W. et al. Molecular phylogenetic analyses reveal multiple long-distance dispersal events and extensive cryptic speciation in Nervilia (Orchidaceae), an isolated basal Epidendroid genus // Frontiers in Plant Science. 2025. Vol. 15.
GOST all authors (up to 50) Copy
Gale S. W., Li J., Suddee S., Traiperm P., Peter C. I., Buruwate T., Crain B. J., McCormick M. K., Whigham D. F., Musthofa A., Gogoi K., Ito K., Minamiya Y., Fukuda T., Landrein S., Yukawa T. Molecular phylogenetic analyses reveal multiple long-distance dispersal events and extensive cryptic speciation in Nervilia (Orchidaceae), an isolated basal Epidendroid genus // Frontiers in Plant Science. 2025. Vol. 15.
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RIS Copy
TY - JOUR
DO - 10.3389/fpls.2024.1495487
UR - https://www.frontiersin.org/articles/10.3389/fpls.2024.1495487/full
TI - Molecular phylogenetic analyses reveal multiple long-distance dispersal events and extensive cryptic speciation in Nervilia (Orchidaceae), an isolated basal Epidendroid genus
T2 - Frontiers in Plant Science
AU - Gale, Stephan W.
AU - Li, Jihong
AU - Suddee, Somran
AU - Traiperm, Paweena
AU - Peter, Craig I
AU - Buruwate, Tomas
AU - Crain, Benjamin J
AU - McCormick, Melissa K.
AU - Whigham, Dennis F.
AU - Musthofa, Arni
AU - Gogoi, Khyanjeet
AU - Ito, Katsura
AU - Minamiya, Yukio
AU - Fukuda, Tatsuya
AU - Landrein, Sven
AU - Yukawa, Tomohisa
PY - 2025
DA - 2025/02/20
PB - Frontiers Media S.A.
VL - 15
SN - 1664-462X
ER -
BibTex
Cite this
BibTex (up to 50 authors) Copy
@article{2025_Gale,
author = {Stephan W. Gale and Jihong Li and Somran Suddee and Paweena Traiperm and Craig I Peter and Tomas Buruwate and Benjamin J Crain and Melissa K. McCormick and Dennis F. Whigham and Arni Musthofa and Khyanjeet Gogoi and Katsura Ito and Yukio Minamiya and Tatsuya Fukuda and Sven Landrein and Tomohisa Yukawa},
title = {Molecular phylogenetic analyses reveal multiple long-distance dispersal events and extensive cryptic speciation in Nervilia (Orchidaceae), an isolated basal Epidendroid genus},
journal = {Frontiers in Plant Science},
year = {2025},
volume = {15},
publisher = {Frontiers Media S.A.},
month = {feb},
url = {https://www.frontiersin.org/articles/10.3389/fpls.2024.1495487/full},
doi = {10.3389/fpls.2024.1495487}
}