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Open access

StarGazer: A Hybrid Intelligence Platform for Drug Target Prioritization and Digital Drug Repositioning Using Streamlit

Chiyun Lee 1
Junxia Lin 2
Andrzej Prokop 3
Vancheswaran Gopalakrishnan 4
Richard N. Hanna 5
Eliseo Papa 6
Adrian Freeman 7
Saleha Patel 7
Wen Yu 8
Monika Huhn 9
Abdul-Saboor Sheikh 1
Keith Tan 10
Bret R Sellman 4
Taylor Cohen 4
Jonathan Mangion 1
Faisal M. Khan 8
Yuriy Gusev 2
Khader Shameer 8
3
 
Biometrics, Oncology R&D, AstraZeneca, Poland
4
 
Discovery Microbiome, BioPharmaceuticals R&D, AstraZeneca, United States
5
 
Early Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, United States
8
 
Data Science and Artificial Intelligence, BioPharmaceuticals R&D, AstraZeneca, United States
9
 
Biometrics and Information Sciences, BioPharmaceuticals R&D, AstraZeneca, Sweden
Publication typeJournal Article
Publication date2022-05-31
scimago Q2
wos Q2
SJR0.863
CiteScore6.2
Impact factor2.8
ISSN16648021
Genetics
Molecular Medicine
Genetics (clinical)
Abstract

Target prioritization is essential for drug discovery and repositioning. Applying computational methods to analyze and process multi-omics data to find new drug targets is a practical approach for achieving this. Despite an increasing number of methods for generating datasets such as genomics, phenomics, and proteomics, attempts to integrate and mine such datasets remain limited in scope. Developing hybrid intelligence solutions that combine human intelligence in the scientific domain and disease biology with the ability to mine multiple databases simultaneously may help augment drug target discovery and identify novel drug-indication associations. We believe that integrating different data sources using a singular numerical scoring system in a hybrid intelligent framework could help to bridge these different omics layers and facilitate rapid drug target prioritization for studies in drug discovery, development or repositioning. Herein, we describe our prototype of the StarGazer pipeline which combines multi-source, multi-omics data with a novel target prioritization scoring system in an interactive Python-based Streamlit dashboard. StarGazer displays target prioritization scores for genes associated with 1844 phenotypic traits, and is available via https://github.com/AstraZeneca/StarGazer.

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GOST |
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GOST Copy
Lee C. et al. StarGazer: A Hybrid Intelligence Platform for Drug Target Prioritization and Digital Drug Repositioning Using Streamlit // Frontiers in Genetics. 2022. Vol. 13.
GOST all authors (up to 50) Copy
Lee C., Lin J., Prokop A., Gopalakrishnan V., Hanna R. N., Papa E., Freeman A., Patel S., Yu W., Huhn M., Sheikh A., Tan K., Sellman B. R., Cohen T., Mangion J., Khan F. M., Gusev Y., Shameer K. StarGazer: A Hybrid Intelligence Platform for Drug Target Prioritization and Digital Drug Repositioning Using Streamlit // Frontiers in Genetics. 2022. Vol. 13.
RIS |
Cite this
RIS Copy
TY - JOUR
DO - 10.3389/fgene.2022.868015
UR - https://doi.org/10.3389/fgene.2022.868015
TI - StarGazer: A Hybrid Intelligence Platform for Drug Target Prioritization and Digital Drug Repositioning Using Streamlit
T2 - Frontiers in Genetics
AU - Lee, Chiyun
AU - Lin, Junxia
AU - Prokop, Andrzej
AU - Gopalakrishnan, Vancheswaran
AU - Hanna, Richard N.
AU - Papa, Eliseo
AU - Freeman, Adrian
AU - Patel, Saleha
AU - Yu, Wen
AU - Huhn, Monika
AU - Sheikh, Abdul-Saboor
AU - Tan, Keith
AU - Sellman, Bret R
AU - Cohen, Taylor
AU - Mangion, Jonathan
AU - Khan, Faisal M.
AU - Gusev, Yuriy
AU - Shameer, Khader
PY - 2022
DA - 2022/05/31
PB - Frontiers Media S.A.
VL - 13
PMID - 35711912
SN - 1664-8021
ER -
BibTex
Cite this
BibTex (up to 50 authors) Copy
@article{2022_Lee,
author = {Chiyun Lee and Junxia Lin and Andrzej Prokop and Vancheswaran Gopalakrishnan and Richard N. Hanna and Eliseo Papa and Adrian Freeman and Saleha Patel and Wen Yu and Monika Huhn and Abdul-Saboor Sheikh and Keith Tan and Bret R Sellman and Taylor Cohen and Jonathan Mangion and Faisal M. Khan and Yuriy Gusev and Khader Shameer},
title = {StarGazer: A Hybrid Intelligence Platform for Drug Target Prioritization and Digital Drug Repositioning Using Streamlit},
journal = {Frontiers in Genetics},
year = {2022},
volume = {13},
publisher = {Frontiers Media S.A.},
month = {may},
url = {https://doi.org/10.3389/fgene.2022.868015},
doi = {10.3389/fgene.2022.868015}
}