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Horticulturae, volume 8, issue 11, pages 1051

Root and Rhizosphere Microbiome of Tomato Plants Grown in the Open Field in the South of West Siberia under Mineral Fertilization

Naumova Natalia ¹

Baturina Olga ²

Nechaeva Taisia ¹

Kabilov Marsel R. ²

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Institute of Soil Science and Agrochemistry, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia |

Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia |

Publication type: Journal Article

Publication date: 2022-11-08

Multidisciplinary Digital Publishing Institute (MDPI)

Journal: Horticulturae

Quartile SCImago

Quartile WOS

Impact factor: 3.1

ISSN: 23117524

DOI: 10.3390/horticulturae8111051

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Plant Science

Horticulture

Abstract

Agricultural practices can affect root-associated microbiota, but the effect of fertilization is still poorly examined. The aim of this study was to obtain 16S and ITS metagenomic profiles of tomato rhizosphere and root endosphere under mineral (NPK) fertilization in the open field experiment in the south of West Siberia. We found 6 bacterial and 3 fungal phyla in the roots and 24 bacterial and 16 fungal phyla in the rhizosphere. Proteobacteria and Actinobacteria together contributed 90% of the total number of sequence reads in roots and 50% in the rhizosphere, whereas Ascomycota ultimately prevailed in OTUs’ richness and abundance in both biotopes. Fertilization changed the relative abundance of 32 bacterial and 14 fungal OTUs in the rhizosphere and of 7 bacterial and 3 fungal OTUs in roots. The revealed root bacteriobiome response to conventional mineral NPK fertilization by the dominant taxa at the high taxonomic level (class) illustrates well the role of NPK-changed plant metabolism in shaping endophytic microbiota and hence fertilization potential in enhancing plant growth-promoting microorganisms and mitigating plant pathogens. Using fertilization rate gradient in further research may bring a more detailed understanding of how to modify and even fine-tune root-associated microbiomes in order to enhance crops’ health and yields.

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Microorganisms	Microorganisms, 1, 33.33% Microorganisms 1 publication, 33.33%
Plants	Plants, 1, 33.33% Plants 1 publication, 33.33%
Horticulturae	Horticulturae, 1, 33.33% Horticulturae 1 publication, 33.33%
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Multidisciplinary Digital Publishing Institute (MDPI)	Multidisciplinary Digital Publishing Institute (MDPI), 3, 100% Multidisciplinary Digital Publishing Institute (MDPI) 3 publications, 100%
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Naumova N. et al. Root and Rhizosphere Microbiome of Tomato Plants Grown in the Open Field in the South of West Siberia under Mineral Fertilization // Horticulturae. 2022. Vol. 8. No. 11. p. 1051.

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Naumova N., Baturina O., Nechaeva T., Kabilov M. R. Root and Rhizosphere Microbiome of Tomato Plants Grown in the Open Field in the South of West Siberia under Mineral Fertilization // Horticulturae. 2022. Vol. 8. No. 11. p. 1051.

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RIS Copy

TY - JOUR

DO - 10.3390/horticulturae8111051

UR - https://doi.org/10.3390%2Fhorticulturae8111051

TI - Root and Rhizosphere Microbiome of Tomato Plants Grown in the Open Field in the South of West Siberia under Mineral Fertilization

T2 - Horticulturae

AU - Naumova, Natalia

AU - Baturina, Olga

AU - Nechaeva, Taisia

AU - Kabilov, Marsel R.

PY - 2022

DA - 2022/11/08 00:00:00

PB - Multidisciplinary Digital Publishing Institute (MDPI)

SP - 1051

IS - 11

VL - 8

SN - 2311-7524

ER -

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@article{2022_Naumova,

author = {Natalia Naumova and Olga Baturina and Taisia Nechaeva and Marsel R. Kabilov},

title = {Root and Rhizosphere Microbiome of Tomato Plants Grown in the Open Field in the South of West Siberia under Mineral Fertilization},

journal = {Horticulturae},

year = {2022},

volume = {8},

publisher = {Multidisciplinary Digital Publishing Institute (MDPI)},

month = {nov},

url = {https://doi.org/10.3390%2Fhorticulturae8111051},

number = {11},

pages = {1051},

doi = {10.3390/horticulturae8111051}

}

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Naumova, Natalia, et al. “Root and Rhizosphere Microbiome of Tomato Plants Grown in the Open Field in the South of West Siberia under Mineral Fertilization.” Horticulturae, vol. 8, no. 11, Nov. 2022, p. 1051. https://doi.org/10.3390%2Fhorticulturae8111051.

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Publisher

Multidisciplinary Digital Publishing Institute (MDPI)

Journal

Horticulturae

Quartile SCImago

Quartile WOS

Impact factor

3.1

ISSN

23117524 (Electronic)

Labs

CCP "Genomics"

Profiles

Kabilov, Marsel Rasimovich