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Viruses, volume 15, issue 1, pages 216

A Genome of Temperate Enterococcus Bacteriophage Placed in a Space of Pooled Viral Dark Matter Sequences

Pchelin Ivan M 1
, 
Tkachev Pavel V 1
, 
Azarov Daniil V 1
, 
Gorshkov Andrey N 2, 3
, 
Drachko Daria O 4, 5
, 
Zlatogursky Vasily V. 5
, 
Dmitriev Alexander V 1
, 
Goncharov Artemiy E. 1
1
 
2
 
3
 
4
 
5
 
Publication type: Journal Article
Publication date: 2023-01-12
Journal: Viruses
Quartile SCImago
Q1
Quartile WOS
Q2
Impact factor: 4.7
ISSN: 19994915
Infectious Diseases
Virology
Abstract

In the human gut, temperate bacteriophages interact with bacteria through a predation and horizontal gene transfer. Relying on taxonomic data, metagenomic studies have associated shifts in the phage abundance with a number of human diseases. The temperate bacteriophage VEsP-1 with siphovirus morphology was isolated from a sample of river water using Enterococcus faecalis as a host. Starting from the whole genome sequence of VEsP-1, we retrieved related phage genomes in blastp searches of the tail protein and large terminase sequences, and blastn searches of the whole genome sequences, with matches compiled from several different databases, and visualized a part of a viral dark matter sequence space. The genome network and phylogenomic analyses resulted in the proposal of a novel genus “Vespunovirus”, consisting of temperate, mainly metagenomic phages infecting Enterococcus spp.

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Pchelin I. M. et al. A Genome of Temperate Enterococcus Bacteriophage Placed in a Space of Pooled Viral Dark Matter Sequences // Viruses. 2023. Vol. 15. No. 1. p. 216.
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Pchelin I. M., Tkachev P. V., Azarov D. V., Gorshkov A. N., Drachko D. O., Zlatogursky V. V., Dmitriev A. V., Goncharov A. E. A Genome of Temperate Enterococcus Bacteriophage Placed in a Space of Pooled Viral Dark Matter Sequences // Viruses. 2023. Vol. 15. No. 1. p. 216.
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TY - JOUR
DO - 10.3390/v15010216
UR - https://doi.org/10.3390%2Fv15010216
TI - A Genome of Temperate Enterococcus Bacteriophage Placed in a Space of Pooled Viral Dark Matter Sequences
T2 - Viruses
AU - Pchelin, Ivan M
AU - Tkachev, Pavel V
AU - Azarov, Daniil V
AU - Gorshkov, Andrey N
AU - Drachko, Daria O
AU - Zlatogursky, Vasily V.
AU - Dmitriev, Alexander V
AU - Goncharov, Artemiy E.
PY - 2023
DA - 2023/01/12 00:00:00
PB - Multidisciplinary Digital Publishing Institute (MDPI)
SP - 216
IS - 1
VL - 15
SN - 1999-4915
ER -
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@article{2023_Pchelin,
author = {Ivan M Pchelin and Pavel V Tkachev and Daniil V Azarov and Andrey N Gorshkov and Daria O Drachko and Vasily V. Zlatogursky and Alexander V Dmitriev and Artemiy E. Goncharov},
title = {A Genome of Temperate Enterococcus Bacteriophage Placed in a Space of Pooled Viral Dark Matter Sequences},
journal = {Viruses},
year = {2023},
volume = {15},
publisher = {Multidisciplinary Digital Publishing Institute (MDPI)},
month = {jan},
url = {https://doi.org/10.3390%2Fv15010216},
number = {1},
pages = {216},
doi = {10.3390/v15010216}
}
MLA
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Pchelin, Ivan M., et al. “A Genome of Temperate Enterococcus Bacteriophage Placed in a Space of Pooled Viral Dark Matter Sequences.” Viruses, vol. 15, no. 1, Jan. 2023, p. 216. https://doi.org/10.3390%2Fv15010216.
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