Critical hydrogen bonds and protonation states of pyridoxal 5′-phosphate revealed by NMR
Publication type: Journal Article
Publication date: 2011-11-01
scimago Q2
wos Q3
SJR: 0.720
CiteScore: 5.9
Impact factor: 2.3
ISSN: 15709639, 18781454
PubMed ID:
21703367
Biochemistry
Molecular Biology
Biophysics
Analytical Chemistry
Abstract
In this contribution we review recent NMR studies of protonation and hydrogen bond states of pyridoxal 5'-phosphate (PLP) and PLP model Schiff bases in different environments, starting from aqueous solution, the organic solid state to polar organic solution and finally to enzyme environments. We have established hydrogen bond correlations that allow one to estimate hydrogen bond geometries from (15)N chemical shifts. It is shown that protonation of the pyridine ring of PLP in aspartate aminotransferase (AspAT) is achieved by (i) an intermolecular OHN hydrogen bond with an aspartate residue, assisted by the imidazole group of a histidine side chain and (ii) a local polarity as found for related model systems in a polar organic solvent exhibiting a dielectric constant of about 30. Model studies indicate that protonation of the pyridine ring of PLP leads to a dominance of the ketoenamine form, where the intramolecular OHN hydrogen bond of PLP exhibits a zwitterionic state. Thus, the PLP moiety in AspAT carries a net positive charge considered as a pre-requisite to initiate the enzyme reaction. However, it is shown that the ketoenamine form dominates in the absence of ring protonation when PLP is solvated by polar groups such as water. Finally, the differences between acid-base interactions in aqueous solution and in the interior of proteins are discussed. This article is part of a special issue entitled: Pyridoxal Phosphate Enzymology.
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LIMBACH H. G. et al. Critical hydrogen bonds and protonation states of pyridoxal 5′-phosphate revealed by NMR // Biochimica et Biophysica Acta - Proteins and Proteomics. 2011. Vol. 1814. No. 11. pp. 1426-1437.
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LIMBACH H. G., Chan Huot M., Sharif S., Tolstoy P. M., Shenderovich I. G., Denisov G. S., Toney M. Critical hydrogen bonds and protonation states of pyridoxal 5′-phosphate revealed by NMR // Biochimica et Biophysica Acta - Proteins and Proteomics. 2011. Vol. 1814. No. 11. pp. 1426-1437.
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RIS
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TY - JOUR
DO - 10.1016/j.bbapap.2011.06.004
UR - https://doi.org/10.1016/j.bbapap.2011.06.004
TI - Critical hydrogen bonds and protonation states of pyridoxal 5′-phosphate revealed by NMR
T2 - Biochimica et Biophysica Acta - Proteins and Proteomics
AU - LIMBACH, H. G.
AU - Chan Huot, Monique
AU - Sharif, Shasad
AU - Tolstoy, Peter M.
AU - Shenderovich, Ilya G.
AU - Denisov, Gleb S.
AU - Toney, Michael
PY - 2011
DA - 2011/11/01
PB - Elsevier
SP - 1426-1437
IS - 11
VL - 1814
PMID - 21703367
SN - 1570-9639
SN - 1878-1454
ER -
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BibTex (up to 50 authors)
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@article{2011_LIMBACH,
author = {H. G. LIMBACH and Monique Chan Huot and Shasad Sharif and Peter M. Tolstoy and Ilya G. Shenderovich and Gleb S. Denisov and Michael Toney},
title = {Critical hydrogen bonds and protonation states of pyridoxal 5′-phosphate revealed by NMR},
journal = {Biochimica et Biophysica Acta - Proteins and Proteomics},
year = {2011},
volume = {1814},
publisher = {Elsevier},
month = {nov},
url = {https://doi.org/10.1016/j.bbapap.2011.06.004},
number = {11},
pages = {1426--1437},
doi = {10.1016/j.bbapap.2011.06.004}
}
Cite this
MLA
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LIMBACH, H. G., et al. “Critical hydrogen bonds and protonation states of pyridoxal 5′-phosphate revealed by NMR.” Biochimica et Biophysica Acta - Proteins and Proteomics, vol. 1814, no. 11, Nov. 2011, pp. 1426-1437. https://doi.org/10.1016/j.bbapap.2011.06.004.