CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs
Thomas Giannos
1
,
Samo Lešnik
2
,
Urban Bren
2, 3
,
Milan Hodošček
4
,
Tatiana Domratcheva
5, 6
,
Ana-Nicoleta Bondar
1, 7, 8
Publication type: Journal Article
Publication date: 2021-08-05
scimago Q1
wos Q1
SJR: 1.467
CiteScore: 9.8
Impact factor: 5.3
ISSN: 15499596, 1549960X
PubMed ID:
34351148
General Chemistry
Computer Science Applications
General Chemical Engineering
Library and Information Sciences
Abstract
Opioid drug binding to specialized G protein-coupled receptors (GPCRs) can lead to analgesia upon activation via downstream Gi protein signaling and to severe side effects via activation of the β-arrestin signaling pathway. Knowledge of how different opioid drugs interact with receptors is essential, as it can inform and guide the design of safer therapeutics. We performed quantum and classical mechanical computations to explore the potential energy landscape of four opioid drugs: morphine and its derivatives heroin and fentanyl and for the unrelated oliceridine. From potential energy profiles for bond twists and from interactions between opioids and water, we derived a set of force-field parameters that allow a good description of structural properties and intermolecular interactions of the opioids. Potential of mean force profiles computed from molecular dynamics simulations indicate that fentanyl and oliceridine have complex energy landscapes with relatively small energy penalties, suggesting that interactions with the receptor could select different binding poses of the drugs.
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Total citations:
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Citations from 2024:
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(46%)
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GOST
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Giannos T. et al. CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs // Journal of Chemical Information and Modeling. 2021. Vol. 61. No. 8. pp. 3964-3977.
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Giannos T., Lešnik S., Bren U., Hodošček M., Domratcheva T., Bondar A. CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs // Journal of Chemical Information and Modeling. 2021. Vol. 61. No. 8. pp. 3964-3977.
Cite this
RIS
Copy
TY - JOUR
DO - 10.1021/acs.jcim.1c00667
UR - https://pubs.acs.org/doi/10.1021/acs.jcim.1c00667
TI - CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs
T2 - Journal of Chemical Information and Modeling
AU - Giannos, Thomas
AU - Lešnik, Samo
AU - Bren, Urban
AU - Hodošček, Milan
AU - Domratcheva, Tatiana
AU - Bondar, Ana-Nicoleta
PY - 2021
DA - 2021/08/05
PB - American Chemical Society (ACS)
SP - 3964-3977
IS - 8
VL - 61
PMID - 34351148
SN - 1549-9596
SN - 1549-960X
ER -
Cite this
BibTex (up to 50 authors)
Copy
@article{2021_Giannos,
author = {Thomas Giannos and Samo Lešnik and Urban Bren and Milan Hodošček and Tatiana Domratcheva and Ana-Nicoleta Bondar},
title = {CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs},
journal = {Journal of Chemical Information and Modeling},
year = {2021},
volume = {61},
publisher = {American Chemical Society (ACS)},
month = {aug},
url = {https://pubs.acs.org/doi/10.1021/acs.jcim.1c00667},
number = {8},
pages = {3964--3977},
doi = {10.1021/acs.jcim.1c00667}
}
Cite this
MLA
Copy
Giannos, Thomas, et al. “CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs.” Journal of Chemical Information and Modeling, vol. 61, no. 8, Aug. 2021, pp. 3964-3977. https://pubs.acs.org/doi/10.1021/acs.jcim.1c00667.