Parametrization of Nonbonded Force Field Terms for Metal-Organic Frameworks Using Machine Learning Approach
Publication type: Journal Article
Publication date: 2021-11-17
scimago Q1
wos Q1
SJR: 1.467
CiteScore: 9.8
Impact factor: 5.3
ISSN: 15499596, 1549960X
PubMed ID:
34787430
General Chemistry
Computer Science Applications
General Chemical Engineering
Library and Information Sciences
Abstract
The enormous structural and chemical diversity of metal-organic frameworks (MOFs) forces researchers to actively use simulation techniques as often as experiments. MOFs are widely known for their outstanding adsorption properties, so a precise description of the host-guest interactions is essential for high-throughput screening aimed at ranking the most promising candidates. However, highly accurate ab initio calculations cannot be routinely applied to model thousands of structures due to the demanding computational costs. Furthermore, methods based on force field (FF) parametrization suffer from low transferability. To resolve this accuracy-efficiency dilemma, we applied a machine learning (ML) approach: extreme gradient boosting. The trained models reproduced the atom-in-material quantities, including partial charges, polarizabilities, dispersion coefficients, quantum Drude oscillator, and electron cloud parameters, with accuracy similar to the reference data set. The aforementioned FF precursors make it possible to thoroughly describe noncovalent interactions typical for MOF-adsorbate systems: electrostatic, dispersion, polarization, and short-range repulsion. The presented approach can also readily facilitate hybrid atomistic simulation/ML workflows.
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15
Total citations:
15
Citations from 2024:
11
(73.33%)
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GOST
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Korolev V. et al. Parametrization of Nonbonded Force Field Terms for Metal-Organic Frameworks Using Machine Learning Approach // Journal of Chemical Information and Modeling. 2021. Vol. 61. No. 12. pp. 5774-5784.
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Korolev V., Nevolin Y. M., Manz T. A., Protsenko P. Parametrization of Nonbonded Force Field Terms for Metal-Organic Frameworks Using Machine Learning Approach // Journal of Chemical Information and Modeling. 2021. Vol. 61. No. 12. pp. 5774-5784.
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RIS
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TY - JOUR
DO - 10.1021/acs.jcim.1c01124
UR - https://doi.org/10.1021/acs.jcim.1c01124
TI - Parametrization of Nonbonded Force Field Terms for Metal-Organic Frameworks Using Machine Learning Approach
T2 - Journal of Chemical Information and Modeling
AU - Korolev, Vadim
AU - Nevolin, Yuriy M
AU - Manz, Thomas A.
AU - Protsenko, P.
PY - 2021
DA - 2021/11/17
PB - American Chemical Society (ACS)
SP - 5774-5784
IS - 12
VL - 61
PMID - 34787430
SN - 1549-9596
SN - 1549-960X
ER -
Cite this
BibTex (up to 50 authors)
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@article{2021_Korolev,
author = {Vadim Korolev and Yuriy M Nevolin and Thomas A. Manz and P. Protsenko},
title = {Parametrization of Nonbonded Force Field Terms for Metal-Organic Frameworks Using Machine Learning Approach},
journal = {Journal of Chemical Information and Modeling},
year = {2021},
volume = {61},
publisher = {American Chemical Society (ACS)},
month = {nov},
url = {https://doi.org/10.1021/acs.jcim.1c01124},
number = {12},
pages = {5774--5784},
doi = {10.1021/acs.jcim.1c01124}
}
Cite this
MLA
Copy
Korolev, Vadim, et al. “Parametrization of Nonbonded Force Field Terms for Metal-Organic Frameworks Using Machine Learning Approach.” Journal of Chemical Information and Modeling, vol. 61, no. 12, Nov. 2021, pp. 5774-5784. https://doi.org/10.1021/acs.jcim.1c01124.