Self-Assembly of Phosphocholine Derivatives Using the ELBA Coarse-Grained Model: Micelles, Bicelles, and Reverse Micelles
Publication type: Journal Article
Publication date: 2019-11-12
scimago Q1
wos Q1
SJR: 1.467
CiteScore: 9.8
Impact factor: 5.3
ISSN: 15499596, 1549960X
PubMed ID:
31714768
General Chemistry
Computer Science Applications
General Chemical Engineering
Library and Information Sciences
Abstract
The ELBA coarse-grained force field was originally developed for lipids and its water model is described as a single-site Lennard-Jones particle with electrostatics modeled by an embedded point-dipole, while other molecules in this force field have a three (or four)- to-one mapping scheme. Here, ELBA was applied to investigate the self-assembly processes of dodecyl-phosphocholine (DPC) micelle, 1,2-dipalmitoyl-sn-glycero-3-phosphocholine / 1,2-dihexaoyl-sn-glycero-3-phosphocholine (DPPC/DHPC) bicelles and DPPC/cyclohexane/water reverse micelles through coarse-grained molecular dynamics (MD) simulations. New parameters were obtained using a simplex algorithmbased calibration procedure to determine the Lennard-Jones parameters for cyclohexane, dodecane and cyclohexane-dodecane cross-interactions. Density, self-diffusion coefficient, surface tension and mixture excess volume were found to be in fair agreement with experimental data. These new parameters were used in the simulations and the obtained structures were analyzed for shape, size, volume and surface area. Except for the shape of DPC micelles, all other properties match well with available experimental data and all-atom simulations. Remarkably, in agreement with experiments the rod-like shape of the DPPC reverse micelle is well described by ELBA, while all-atom data in the literature predicts a disc-like shape. To further check the consistency of the force field in reproducing the correct shapes of reverse micelles, additional simulations were performed doubling the system size. Two distinct reverse micelles were obtained both presenting the rod-like shape and correct aggregation number.
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Total citations:
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Citations from 2024:
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(18%)
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GOST
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De Souza D. M. et al. Self-Assembly of Phosphocholine Derivatives Using the ELBA Coarse-Grained Model: Micelles, Bicelles, and Reverse Micelles // Journal of Chemical Information and Modeling. 2019. Vol. 60. No. 2. pp. 522-536.
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De Souza D. M., Ratochinski R. H., Lovell J. F., Dias L. G. Self-Assembly of Phosphocholine Derivatives Using the ELBA Coarse-Grained Model: Micelles, Bicelles, and Reverse Micelles // Journal of Chemical Information and Modeling. 2019. Vol. 60. No. 2. pp. 522-536.
Cite this
RIS
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TY - JOUR
DO - 10.1021/acs.jcim.9b00790
UR - https://doi.org/10.1021/acs.jcim.9b00790
TI - Self-Assembly of Phosphocholine Derivatives Using the ELBA Coarse-Grained Model: Micelles, Bicelles, and Reverse Micelles
T2 - Journal of Chemical Information and Modeling
AU - De Souza, Débora M
AU - Ratochinski, R H
AU - Lovell, Jonathan F.
AU - Dias, Luis Gustavo
PY - 2019
DA - 2019/11/12
PB - American Chemical Society (ACS)
SP - 522-536
IS - 2
VL - 60
PMID - 31714768
SN - 1549-9596
SN - 1549-960X
ER -
Cite this
BibTex (up to 50 authors)
Copy
@article{2019_De Souza,
author = {Débora M De Souza and R H Ratochinski and Jonathan F. Lovell and Luis Gustavo Dias},
title = {Self-Assembly of Phosphocholine Derivatives Using the ELBA Coarse-Grained Model: Micelles, Bicelles, and Reverse Micelles},
journal = {Journal of Chemical Information and Modeling},
year = {2019},
volume = {60},
publisher = {American Chemical Society (ACS)},
month = {nov},
url = {https://doi.org/10.1021/acs.jcim.9b00790},
number = {2},
pages = {522--536},
doi = {10.1021/acs.jcim.9b00790}
}
Cite this
MLA
Copy
De Souza, Débora M., et al. “Self-Assembly of Phosphocholine Derivatives Using the ELBA Coarse-Grained Model: Micelles, Bicelles, and Reverse Micelles.” Journal of Chemical Information and Modeling, vol. 60, no. 2, Nov. 2019, pp. 522-536. https://doi.org/10.1021/acs.jcim.9b00790.