Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics
D. V. Fedorov
1
,
Kazuo Kitaura
2, 3
Publication type: Journal Article
Publication date: 2018-02-06
scimago Q2
wos Q2
SJR: 0.634
CiteScore: 4.8
Impact factor: 2.8
ISSN: 10895639, 15205215
PubMed ID:
29337557
Physical and Theoretical Chemistry
Abstract
Pair interaction energy decomposition analysis in the fragment molecular orbital (FMO) method is extended to treat density functional theory (DFT) and density-functional tight-binding (DFTB). Fluctuations of energy contributions are obtained from molecular dynamics simulations. Interactions at the DFT and DFTB levels are compared to the values obtained with Hartree-Fock, second-order Møller-Plesset (MP2), and coupled cluster methods. Hydrogen bonding in water clusters is analyzed. 200 ps NVT molecular dynamics simulations are performed with FMO for two ligands bound to the Trp-cage miniprotein (PDB 1L2Y ); the fluctuations of fragment energies and interactions are analyzed.
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Total citations:
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Citations from 2024:
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Fedorov D. V., Kitaura K. Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics // Journal of Physical Chemistry A. 2018. Vol. 122. No. 6. pp. 1781-1795.
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Fedorov D. V., Kitaura K. Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics // Journal of Physical Chemistry A. 2018. Vol. 122. No. 6. pp. 1781-1795.
Cite this
RIS
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TY - JOUR
DO - 10.1021/acs.jpca.7b12000
UR - https://doi.org/10.1021/acs.jpca.7b12000
TI - Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics
T2 - Journal of Physical Chemistry A
AU - Fedorov, D. V.
AU - Kitaura, Kazuo
PY - 2018
DA - 2018/02/06
PB - American Chemical Society (ACS)
SP - 1781-1795
IS - 6
VL - 122
PMID - 29337557
SN - 1089-5639
SN - 1520-5215
ER -
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BibTex (up to 50 authors)
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@article{2018_Fedorov,
author = {D. V. Fedorov and Kazuo Kitaura},
title = {Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics},
journal = {Journal of Physical Chemistry A},
year = {2018},
volume = {122},
publisher = {American Chemical Society (ACS)},
month = {feb},
url = {https://doi.org/10.1021/acs.jpca.7b12000},
number = {6},
pages = {1781--1795},
doi = {10.1021/acs.jpca.7b12000}
}
Cite this
MLA
Copy
Fedorov, D. V., et al. “Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics.” Journal of Physical Chemistry A, vol. 122, no. 6, Feb. 2018, pp. 1781-1795. https://doi.org/10.1021/acs.jpca.7b12000.
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