volume 122 issue 6 pages 1781-1795

Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics

Publication typeJournal Article
Publication date2018-02-06
scimago Q2
wos Q2
SJR0.634
CiteScore4.8
Impact factor2.8
ISSN10895639, 15205215
Physical and Theoretical Chemistry
Abstract
Pair interaction energy decomposition analysis in the fragment molecular orbital (FMO) method is extended to treat density functional theory (DFT) and density-functional tight-binding (DFTB). Fluctuations of energy contributions are obtained from molecular dynamics simulations. Interactions at the DFT and DFTB levels are compared to the values obtained with Hartree-Fock, second-order Møller-Plesset (MP2), and coupled cluster methods. Hydrogen bonding in water clusters is analyzed. 200 ps NVT molecular dynamics simulations are performed with FMO for two ligands bound to the Trp-cage miniprotein (PDB 1L2Y ); the fluctuations of fragment energies and interactions are analyzed.
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Fedorov D. V., Kitaura K. Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics // Journal of Physical Chemistry A. 2018. Vol. 122. No. 6. pp. 1781-1795.
GOST all authors (up to 50) Copy
Fedorov D. V., Kitaura K. Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics // Journal of Physical Chemistry A. 2018. Vol. 122. No. 6. pp. 1781-1795.
RIS |
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RIS Copy
TY - JOUR
DO - 10.1021/acs.jpca.7b12000
UR - https://doi.org/10.1021/acs.jpca.7b12000
TI - Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics
T2 - Journal of Physical Chemistry A
AU - Fedorov, D. V.
AU - Kitaura, Kazuo
PY - 2018
DA - 2018/02/06
PB - American Chemical Society (ACS)
SP - 1781-1795
IS - 6
VL - 122
PMID - 29337557
SN - 1089-5639
SN - 1520-5215
ER -
BibTex |
Cite this
BibTex (up to 50 authors) Copy
@article{2018_Fedorov,
author = {D. V. Fedorov and Kazuo Kitaura},
title = {Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics},
journal = {Journal of Physical Chemistry A},
year = {2018},
volume = {122},
publisher = {American Chemical Society (ACS)},
month = {feb},
url = {https://doi.org/10.1021/acs.jpca.7b12000},
number = {6},
pages = {1781--1795},
doi = {10.1021/acs.jpca.7b12000}
}
MLA
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MLA Copy
Fedorov, D. V., et al. “Pair Interaction Energy Decomposition Analysis for Density Functional Theory and Density-Functional Tight-Binding with an Evaluation of Energy Fluctuations in Molecular Dynamics.” Journal of Physical Chemistry A, vol. 122, no. 6, Feb. 2018, pp. 1781-1795. https://doi.org/10.1021/acs.jpca.7b12000.
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