Zhu J.J.
•Octuple-sexdecuple patch recordings enable architectonics of complex cortical circuits•Architectonics identifies modular L1 SBC-led disinhibitory circuits across cortices•Architectures of L1 SBC-led disinhibitory circuits construe principles of cortical operation•Architectonics reveals specific deficits at SBC-disinhibited synapses in an AD mouse model Acquisition of neuronal circuit architectures, central to understanding brain function and dysfunction, remains prohibitively challenging. Here I report the development of a simultaneous and sequential octuple-sexdecuple whole-cell patch-clamp recording system that enables architectural reconstruction of complex cortical circuits. The method unveils the canonical layer 1 single bouquet cell (SBC)-led disinhibitory neuronal circuits across the mouse somatosensory, motor, prefrontal, and medial entorhinal cortices. The ∼1,500-neuron modular circuits feature the translaminar, unidirectional, minicolumnar, and independent disinhibition and optimize cortical complexity, subtlety, plasticity, variation, and redundancy. Moreover, architectural reconstruction uncovers age-dependent deficits at SBC-disinhibited synapses in the senescence-accelerated mouse prone 8, an animal model of Alzheimer’s disease. The deficits exhibit the characteristic Alzheimer’s-like cortical spread and correlation with cognitive impairments. These findings decrypt operations of the elementary processing units in healthy and Alzheimer’s mouse cortices and validate the efficacy of octuple-sexdecuple patch-clamp recordings for architectural reconstruction of complex neuronal circuits. Acquisition of neuronal circuit architectures, central to understanding brain function and dysfunction, remains prohibitively challenging. Here I report the development of a simultaneous and sequential octuple-sexdecuple whole-cell patch-clamp recording system that enables architectural reconstruction of complex cortical circuits. The method unveils the canonical layer 1 single bouquet cell (SBC)-led disinhibitory neuronal circuits across the mouse somatosensory, motor, prefrontal, and medial entorhinal cortices. The ∼1,500-neuron modular circuits feature the translaminar, unidirectional, minicolumnar, and independent disinhibition and optimize cortical complexity, subtlety, plasticity, variation, and redundancy. Moreover, architectural reconstruction uncovers age-dependent deficits at SBC-disinhibited synapses in the senescence-accelerated mouse prone 8, an animal model of Alzheimer’s disease. The deficits exhibit the characteristic Alzheimer’s-like cortical spread and correlation with cognitive impairments. These findings decrypt operations of the elementary processing units in healthy and Alzheimer’s mouse cortices and validate the efficacy of octuple-sexdecuple patch-clamp recordings for architectural reconstruction of complex neuronal circuits. The sustained interest in neuronal circuits stems from the belief that intricately organized circuits provide the foundation for brain function.1Abbott L.F. Bock D.D. Callaway E.M. Denk W. Dulac C. Fairhall A.L. Fiete I. Harris K.M. Helmstaedter M. Jain V. et al.The mind of a mouse.Cell. 2020; 182: 1372-1376https://doi.org/10.1016/j.cell.2020.08.010Google Scholar,2Luo L. Architectures of neuronal circuits.Science. 2021; 373eabg7285https://doi.org/10.1126/science.abg7285Google Scholar In the past decade, significant progress has been made in our ability to decipher these circuits at the synaptic level with cell-type specificity, thanks to advancements in anatomic, neurophysiological, genetic, and functional imaging methods.3Kim C.K. Adhikari A. Deisseroth K. Integration of optogenetics with complementary methodologies in systems neuroscience.Nat. Rev. Neurosci. 2017; 18: 222-235https://doi.org/10.1038/nrn.2017.15Google Scholar,4Luo L. Callaway E.M. Svoboda K. Genetic dissection of neural circuits: a decade of progress.Neuron. 2018; 98: 256-281https://doi.org/10.1016/j.neuron.2018.03.040Google Scholar These technical advances have allowed for cell-type-specific circuit analysis, enabling researchers to decode hundreds of functional neuronal circuit motifs, consisting typically of a few different types of neurons, in various animal species. Among the various newly identified circuit motifs are the layer 1 (L1) single bouquet cell (SBC)-led disinhibitory neuronal circuit motifs (i.e., L1 interneurons ⏤⋅ L2/3 interneurons ⏤⋅ L2/3 and/or L5 pyramidal neurons) found in the cortex, which disclose a disinhibition scheme that governs the dendritic coincidence detection mechanism of excitatory neurons and their outputs.5Jiang X. Wang G. Lee A.J. Stornetta R.L. Zhu J.J. The organization of two new cortical interneuronal circuits.Nat. Neurosci. 2013; 16: 210-218https://doi.org/10.1038/nn.3305Google Scholar,6Lee A.J. Wang G. Jiang X. Johnson S.M. Hoang E.T. Lanté F. Stornetta R.L. Beenhakker M.P. Shen Y. Julius Zhu J. Canonical organization of layer 1 neuron-led cortical inhibitory and disinhibitory interneuronal circuits.Cerebr. Cortex. 2015; 25: 2114-2126https://doi.org/10.1093/cercor/bhu020Google Scholar This cortical disinhibition mechanism has been implicated in various high cognitive behaviors, such as perception, attention, learning, and memory.7Cichon J. Gan W.B. Branch-specific dendritic Ca2+ spikes cause persistent synaptic plasticity.Nature. 2015; 520: 180-185https://doi.org/10.1038/nature14251Google Scholar,8Takahashi N. Oertner T.G. Hegemann P. Larkum M.E. Active cortical dendrites modulate perception.Science. 2016; 354: 1587-1590https://doi.org/10.1126/science.aah6066Google Scholar,9Doron G. 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A disinhibitory microcircuit for associative fear learning in the auditory cortex.Nature. 2011; 480: 331-335https://doi.org/10.1038/nature10674Google Scholar However, understanding the higher-order circuit organization scheme and the overall architectural structure of complex circuits, which involve a large number of neurons and multiple circuit motifs, remains extremely challenging. For example, although optogenetics and functional imaging are effective in determining synaptic connections between neuronal groups, the methods are less suitable for zoom-in manipulation of compactly packed individual neurons to tease out the interconnections of neurons and to figure out the circuit architectural organization.3Kim C.K. Adhikari A. Deisseroth K. Integration of optogenetics with complementary methodologies in systems neuroscience.Nat. Rev. Neurosci. 2017; 18: 222-235https://doi.org/10.1038/nrn.2017.15Google Scholar,4Luo L. Callaway E.M. Svoboda K. Genetic dissection of neural circuits: a decade of progress.Neuron. 2018; 98: 256-281https://doi.org/10.1016/j.neuron.2018.03.040Google Scholar High-speed scanning electron microscopy permits high-resolution analysis of pre- and postsynaptic components, but the process of stitching and aligning miniature image sections to create a zoom-out interlinking diagram of individual neurons or circuit motifs and to see the circuit architectural design is still a daunting task.13Shapson-Coe A. Januszewski M. Berger D.R. Pope A. Wu Y. Blakely T. Schalek R.L. Li P. Wang S. Maitlin-Shepard J. et al.A connectomic study of a petascale fragment of human cerebral cortex.bioRxiv. 2021; (Preprint at) (10.1101/2021.05.29.446289)https://doi.org/10.1101/2021.1105.1129.446289v446281Google Scholar,14Schneider-Mizell C.M. Bodor A. Brittain D. Buchanan J. Bumbarger D.J. Elabbady L. Kapner D. Kinn S. Mahalingam G. 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Architectures of neuronal circuits.Science. 2021; 373eabg7285https://doi.org/10.1126/science.abg7285Google Scholar This study describes the development of a simultaneous and sequential octuple-sexdecuple whole-cell patch-clamp recording system, which allows for direct manipulation and readout from individual neurons. The electrophysiology-based method offers the advantage of analyzing interconnections between a sufficient number of circuit elements (i.e., neurons and associated circuit motifs) to achieve the architectural reconstruction of complex cortical circuits. In the field of connectomics, many investigators use molecular markers to identify and classify neurons. This approach is convenient and genetically manipulable. However, it is important to consider that genetically defined cortical cell groups display a continuum of variability in morphology and electrophysiology, which means they may not represent biological or functional discrete entities.17Huang Z.J. Paul A. The diversity of GABAergic neurons and neural communication elements.Nat. Rev. Neurosci. 2019; 20: 563-572https://doi.org/10.1038/s41583-019-0195-4Google Scholar,18Scala F. Kobak D. Bernabucci M. Bernaerts Y. Cadwell C.R. Castro J.R. Hartmanis L. Jiang X. Laturnus S. Miranda E. et al.Phenotypic variation of transcriptomic cell types in mouse motor cortex.Nature. 2021; 598: 144-150https://doi.org/10.1038/s41586-020-2907-3Google Scholar In particular, caution should be exercised when analyzing cortical interneuronal circuits based on four coarse molecular subgroups, all of which consist of multiple overlapping types of interneurons. For example, parvalbumin-expressing neurons consist of at least baskets cells (BCs) and chandelier cells (ChCs).19Kubota Y. Karube F. Nomura M. Kawaguchi Y. The diversity of cortical inhibitory synapses.Front. Neural Circ. 2016; 10: 27https://doi.org/10.3389/fncir.2016.00027Google Scholar,20Rudy B. Fishell G. Lee S. Hjerling-Leffler J. 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Id2 GABAergic interneurons: a neglected fourth major group of cortical inhibitory cells.bioRxiv. 2022; (Preprint at)https://doi.org/10.1101/2022.12.01.518752Google Scholar This study uses the established neuroanatomical cell classification scheme to identify cortical neurons because electrophysiology allows morphological reconstruction of >95% of neurons after patch-clamp recordings. In the case of inhibitory neurons, the scheme is based purely on their axonal morphology corresponding to their postsynaptic compartment targets and is thus presumably functionally relevant.5Jiang X. Wang G. Lee A.J. Stornetta R.L. Zhu J.J. The organization of two new cortical interneuronal circuits.Nat. Neurosci. 2013; 16: 210-218https://doi.org/10.1038/nn.3305Google Scholar,19Kubota Y. Karube F. Nomura M. Kawaguchi Y. The diversity of cortical inhibitory synapses.Front. Neural Circ. 2016; 10: 27https://doi.org/10.3389/fncir.2016.00027Google Scholar,29Markram H. Muller E. Ramaswamy S. Reimann M.W. 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The analysis disclosed the modular architectural structure of complex L1 SBC-led disinhibitory neuronal circuits across the cortical areas. The architectural structure indicates that the circuits are specifically designed to achieve the distinctive translaminar (engaging all cortical layers), unidirectional (creating 100% dominance), minicolumnar (enclosing area of ∼150 μm in diameter), and independent (forming 100% autonomy) disinhibition. The architectures immediately construe the principles underlying cortical operation. One key principle is that cortical operation utilizes canonical ∼1,500-neuron minicolumnar circuits as basic functional units to optimize complexity, subtlety, plasticity, variation, and redundancy. Additionally, the study investigated the senescence-accelerated mouse prone 8, an Alzheimer’s disease model, and validated the architectural design of the disinhibitory circuits. Interestingly, the architectural analysis of complex cortical circuits in Alzheimer’s mouse brains revealed age-dependent deficits. The deficits were circuit- and connection-specific and occurred selectively at SBC-disinhibited synapses. These synaptic deficits displayed the characteristic cortical spread observed in Alzheimer’s disease and showed correlations with cognitive impairments. The results suggest a disinhibition mechanism that may contribute to the development and progression of Alzheimer’s disease. To interrogate complex cortical circuits comprising ≥10 types of neurons and multiple circuit motifs, we developed a simultaneous and sequential octuple-sexdecuple whole-cell patch-clamp recording method. Our approach combined automated procedural algorithms for electrode positioning with manual operation to achieve precise gigasealing (see STAR Methods). By utilizing automatic algorithms, we achieved high-efficiency recordings, reducing the time to obtain individual cell recordings to ∼3–5 min (cf. Kodandaramaiah et al.32Kodandaramaiah S.B. Flores F.J. Holst G.L. Singer A.C. Han X. Brown E.N. Boyden E.S. Forest C.R. Multi-neuron intracellular recording in vivo via interacting autopatching robots.Elife. 2018; 7e24656https://doi.org/10.7554/eLife.24656Google Scholar). In the meantime, by making manual gigasealing procedure, we achieved high-quality recordings, preserving the high success rate of first-grade whole-cell recordings from interneurons (>95%), and stellate and pyramidal neurons (>99%) (cf. Jiang et al.5Jiang X. Wang G. Lee A.J. Stornetta R.L. Zhu J.J. The organization of two new cortical interneuronal circuits.Nat. Neurosci. 2013; 16: 210-218https://doi.org/10.1038/nn.3305Google Scholar,6Lee A.J. Wang G. Jiang X. Johnson S.M. Hoang E.T. Lanté F. Stornetta R.L. Beenhakker M.P. Shen Y. Julius Zhu J. Canonical organization of layer 1 neuron-led cortical inhibitory and disinhibitory interneuronal circuits.Cerebr. Cortex. 2015; 25: 2114-2126https://doi.org/10.1093/cercor/bhu020Google Scholar). The octuple-sexdecuple patch-clamp recording method allowed us to effectively study constituent neurons across six cortical layers in complex cortical circuits, as well as investigate synaptic connections among recorded neurons (see Figure 1 as an example). The initial application of octuple-sexdecuple patch-clamp recordings reconstructed sufficient elements, including neurons and their connections, leading to a connection diagram of the L1 SBC-led disinhibitory circuit in the mouse somatosensory cortex (Figures 1A–1C). Morphological reconstruction of recorded neurons revealed putative synaptic contacts under light microscopic examination, confirming the connection diagram disclosed by electrophysiological recordings (cf. Jiang et al.5Jiang X. Wang G. Lee A.J. Stornetta R.L. Zhu J.J. The organization of two new cortical interneuronal circuits.Nat. Neurosci. 2013; 16: 210-218https://doi.org/10.1038/nn.3305Google Scholar,6Lee A.J. Wang G. Jiang X. Johnson S.M. Hoang E.T. Lanté F. Stornetta R.L. Beenhakker M.P. Shen Y. Julius Zhu J. Canonical organization of layer 1 neuron-led cortical inhibitory and disinhibitory interneuronal circuits.Cerebr. Cortex. 2015; 25: 2114-2126https://doi.org/10.1093/cercor/bhu020Google Scholar). The analysis revealed that L1 SBCs inhibited interneurons in deeper cortical layers from L2 to L6, but none of stellate and pyramidal neurons in these layers (Figures 1C–1E). Moreover, the inhibited L2-6 interneurons inhibited a significant proportion of L2-6 stellate and pyramidal neurons (Figures 2A–2C ). These results indicate that L1 SBCs establish translaminar disinhibition on stellate and pyramidal neurons across the deeper cortical layers through L2-6 interneurons. Further analysis revealed the executing direction of L1 SBC-led disinhibitory circuits. While SBCs inhibited all groups of interneurons in L2-6, none of the L2-6 interneurons inhibited SBCs (Figures 2A–2C). In comparison, L1 ENGCs inhibited L1 SBCs (Figures 2A–2C), whereas none of SBCs inhibited ENGCs (Figures 1C–1E). These results indicate that L1 SBCs form unidirectional inhibition on L2-6 interneurons, without receiving any reciprocal inhibition back from L2-6 interneurons. These findings suggest that L1 SBC-led disinhibitory circuits, unlike VIP-containing interneuron-mediated more mutual inhibitory-like circuits,33Campagnola L. Seeman S.C. Chartrand T. Kim L. Hoggarth A. Gamlin C. Ito S. Trinh J. Davoudian P. Radaelli C. et al.Local connectivity and synaptic dynamics in mouse and human neocortex.Science. 2022; 375eabj5861https://doi.org/10.1126/science.abj5861Google Scholar predominantly execute dominative unidirectional disinhibition on excitatory neurons. The majority of L2-6 interneurons inhibited by L1 SBCs were found within small columnar regions surrounding the SBCs (Figures 1D and 1E). Mapping the location of SBC-inhibited L2-6 interneurons, as well as SBC-disinhibited L2-6 stellate and pyramidal neurons, revealed that these inhibitory and excitatory neurons were primarily confined to narrow circular columnar areas with a radius of ∼75 μm. The SBCs were positioned at the top centers of these columnar areas (Figures 1D, 1E, and 2D–2F). These findings demonstrate that L1 SBCs establish columnar or minicolumnar-like disinhibition on cortical L2-6 excitatory neurons through the involvement of L2-6 interneurons. The functional relationship between cortical minicolumns has not been previously explored in research.34Buxhoeveden D.P. Casanova M.F. The minicolumn hypothesis in neuroscience.Brain. 2002; 125: 935-951https://doi.org/10.1093/brain/awf110Google Scholar,35Sporns O. Tononi G. Kötter R. The human connectome: a structural description of the human brain.PLoS Comput. Biol. 2005; 1: e42https://doi.org/10.1371/journal.pcbi.0010042Google Scholar By employing octuple-sexdecuple patch-clamp recordings, we greatly increased the probability of obtaining simultaneous recordings from pairs of L1 SBC-led disinhibitory circuits. This allowed us to investigate whether minicolumnar circuits share common circuit elements (Figure 3). The results demonstrated that simultaneously recorded L1 SBCs inhibited L2-6 interneurons, which in turn inhibited L2-6 stellate and pyramidal neurons located within narrow columnar regions beneath the SBCs. These observations confirm the expected characteristics of translaminar, unidirectional, and minicolumnar disinhibitory circuits (Figures 3A–3F). Interestingly, L2-6 interneurons, stellate, and pyramidal neurons involved in one L1 SBC-led disinhibitory circuit participated into neither inhibition nor disinhibition of the other disinhibitory circuit (Figures 3G and 3H). Collectively, these results indicate that L1 SBCs establish translaminar, unidirectional, minicolumnar, and independent disinhibition on cortical L2-6 excitatory neurons through the involvement of L2-6 interneurons in the somatosensory cortex. The modular architecture of L1 SBC-led disinhibitory circuits in the somatosensory cortex provides the long-sought neuronal circuit basis supporting the “minicolumnar cortical architecture” theory, which purports the existence of translaminar and minicolumnar neuronal circuits in heterotypical cortical areas.36Mountcastle V.B. The columnar organization of the neocortex.Brain. 1997; 120: 701-722Google Scholar Previous studies report that L1 SBCs mediate disinhibition in the motor cortex5Jiang X. Wang G. Lee A.J. Stornetta R.L. Zhu J.J. The organization of two new cortical interneuronal circuits.Nat. Neurosci. 2013; 16: 210-218https://doi.org/10.1038/nn.3305Google Scholar,6Lee A.J. Wang G. Jiang X. Johnson S.M. Hoang E.T. Lanté F. Stornetta R.L. Beenhakker M.P. Shen Y. Julius Zhu J. Canonical organization of layer 1 neuron-led cortical inhibitory and disinhibitory interneuronal circuits.Cerebr. Cortex. 2015; 25: 2114-2126https://doi.org/10.1093/cercor/bhu020Google Scholar and disinhibition appears to exist in the other cortical areas, including the prefrontal cortex.37Anastasiades P.G. Collins D.P. Carter A.G. Mediodorsal and ventromedial thalamus engage distinct L1 circuits in the prefrontal cortex.Neuron. 2021; 109: 314-330.e4https://doi.org/10.1016/j.neuron.2020.10.031Google Scholar Octuple-sexdecuple patch-clamp recordings revealed that L1 SBCs inhibited interneurons in L2-6 without being inhibited by L2-6 interneurons in the motor and prefrontal cortex (Figures 4A–4C , 4E–4G, S1, and S2). Furthermore, while L1 SBCs did not inhibit any pyramidal neurons in L2-6, the L1 SBC-inhibited L2-6 interneurons inhibited pyramidal neurons in the motor and prefrontal cortex (Figures 4A–4C, 4E–4G, S1, and S2). Control experiments demonstrated that L1 ENGCs could inhibit SBCs, but SBCs did not inhibit ENGCs in the motor and prefrontal cortex (Figures 4A–4C, 4E–4G, S1, and S2). Additionally, L1 SBC-inhibited interneurons and -disinhibited L2-6 pyramidal neurons were largely confined within narrow columnar areas of ∼75 μm in radius (Figures 4C, 4D, 4G–4H, S1, and S2). These results indicate that L1 SBC-led disinhibitory circuits in the motor and prefrontal cortex exhibit the same translaminar, unidirectional, and minicolumnar disinhibition seen in the somatosensory cortex, suggesting a generalized architectural design for L1 SBC-led disinhibitory circuits across the neocortex. The medial entorhinal cortex, which acts as an interface between the hippocampus and neocortex, is involves in spatial navigation and memory.40Bellmund J.L.S. Gärdenfors P. Moser E.I. Doeller C.F. Navigating cognition: Spatial codes for human thinking.Science. 2018; 362eaat6766https://doi.org/10.1126/science.aat6766Google Scholar Interestingly, as with the neocortex, the medial entorhinal cortex also displays a minicolumnar-like anatomical structure,41Ray S. Naumann R. Burgalossi A. Tang Q. Schmidt H. Brecht M. Grid-layout and theta-modulation of layer 2 pyramidal neurons in medial entorhinal cortex.Science. 2014; 343: 891-896https://doi.org/10.1126/science.1243028Google Scholar employs two coincident mechanisms for the generation of grid cell firing patterns,42Zheng K. Wang G. Miao C. Murphy R. Simonsen Ø.W. Nilssen E.S. Miyazaki K. Ross W.N. Scott M.M. Deisseroth K. et al.A new commissural mechanism in the medial entorihinal cortex.Soc. Neurosci. Abstr. 2021; 23: P101-P108Google Scholar and possesses hallmark L1 SBCs and ENGCs (Figure S3, see also Shi et al.43Shi Y. Cui H. Li X. Chen L. Zhang C. Zhao X. Li X. Shao Q. Sun Q. Yan K. Wang G. Laminar and dorsoventral organization of layer 1 interneuronal microcircuitry in superficial layers of the medial entorhinal cortex.Cell Rep. 2023; 42: 112782Google Scholar). Octuple-sexdecuple patch-clamp recordings revealed the presence of L1 SBC-led disinhibitory circuits in the medial entorhinal cortex (Figures 4I–4K and S4). These circuits involved entorhinal L1 SBCs disinhibiting L2-6 stellate and pyramidal neurons through the participation of L2-6 interneurons, while no inhibitory feedback from L2-6 interneurons to SBCs was observed (Figures 4I–4K and S4). Moreover, all neuronal components of the entorhinal L1 SBC-led disinhibitory circuit were confined within columnar areas with a radius of ∼75 μm beneath the SBCs (Figures 4K–4L and S4). These results indicate that entorhinal L1 SBC-led disinhibitory circuits exhibit the translaminar, unidirectional, and minicolumnar disinhibition features identical to those in the neocortex. The findings support the idea that the modular organizational architecture is applicable across all cortical areas. Reconstructing sufficient elements, including both neurons and their connections, of L1 SBC-led disinhibitory circuits across somatosensory, motor, prefrontal, and entorhinal cortical areas yields several generalized architectural features (Figures 4M–4Q). First, L1 SBCs inhibit at least ∼30% interneurons and disinhibit at least ∼20% stellate and pyramidal neurons in L2-6 in the cortex (Figures 4M–4N), resulting in the translaminar disinhibition on excitatory neurons. Second, L1 SBCs exhibit 100% unidirectional inhibition on L2-6 interneurons, enabling disinhibition of L2-6 stellate and pyramidal neurons in the cortex (Figure 4O), effectively controlling the output of local pools of cortical excitatory neurons. Third, L1 SBCs inhibit L2-6 interneurons and disinhibit L2-6 stellate and pyramidal neurons within narrow columns of ∼75 μm in radius in the cortex, establis
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