volume 604 issue 7906 pages 502-508

Mapping genomic loci implicates genes and synaptic biology in schizophrenia

Vassily Trubetskoy 1
Antonio F. Pardiñas 2
TING QI 3, 4
Georgia Panagiotaropoulou 1
Swapnil Awasthi 1
Tim B. Bigdeli 5, 6, 7
Chen Chia-Yen 8, 9, 10
Charlotte A. Dennison 2
Lynsey S. Hall 2
Max Lam 11, 12, 13
Kyoko Watanabe 14
Oleksandr Frei 15, 16, 17
Tian Ge 10, 11, 18
Janet C Harwood 2
Sigurdur Magnusson 19
Alexander L. Richards 2
Julia Sidorenko 3
Yang Wu 3
Jian Zeng 3
JAKOB GROVE 20, 21, 22
Minsoo Kim 23
Zhiqiang Li 24, 25
Georgios Voloudakis 26
Wen Zhang 26, 27
Mark Adams 28
Ingrid Agartz 15, 29, 30
Elizabeth G. Atkinson 9, 11
Esben Agerbo 20, 31
Mariam Al Eissa 32
Margot Albus 33
Madeline Alexander 34
Behrooz Z. Alizadeh 35, 36
Köksal Alptekin 37, 38
Thomas D. Als 20, 21, 22
Farooq Amin 39
Volker Arolt 40
Manuel Arrojo 41
Lavinia Athanasiu 15, 16
Maria-Helena Azevedo 42
Silviu A Bacanu 43
Nicholas J. Bass 32
Martin Begemann 44
Richard A. Belliveau 11
Judit Bene 45
Beben Benyamin 46, 47, 48
Sarah E. Bergen 49
Giuseppe Blasi 50
Julio Bobes 51, 52, 53
Stefano Bonassi 54
Alice Braun 1
Rodrigo Affonseca Bressan 55, 56
Evelyn J. Bromet 57
Richard Bruggeman 35, 58
Peter F. Buckley 59
Randy L. Buckner 60
Jonas Bybjerg-Grauholm 20, 61
Wiepke Cahn 62, 63
Murray J Cairns 64, 65, 66
Monica E. Calkins 67
Vaughan J Carr 68, 69, 70
David Castle 71, 72
STANLEY V. CATTS 73, 74
Kimberley D Chambert 11
Raymond C. K. Chan 75, 76
Boris Chaumette 77, 78
Cheng Wei 79
Eric F.C. Cheung 80
Siow Ann Chong 12, 81
David Cohen 82, 83, 84
Angèle Consoli 82, 83
Quirino Cordeiro 85
Javier Costas 86
Charles Curtis 87, 88
Michael Davidson 89
KENNETH L. DAVIS 90
Franziska Degenhardt 91
LYNN E. DELISI 18, 92
Ditte Demontis 20, 21, 22
Faith Dickerson 93
Dimitris Dikeos 94
Timothy Dinan 95, 96
Srdjan Djurovic 97, 98
Jubao Duan 99, 100
Giuseppe Ducci 101
Frank Dudbridge 102
Johan G. Eriksson 103, 104, 105
Lourdes Fañanas 106, 107
Stephen V. Faraone 108
Alessia Fiorentino 32
Andreas Forstner 91, 109
Josef Frank 110
Nelson B. Freimer 111, 112
Alessandra Frustaci 113
Ary Gadelha 55, 56
Giulio Genovese 11
Elliot S. Gershon 114
Marianna Giannitelli 82, 83
Ina Giegling 115
Paola Giusti-Rodriguez 116
Stephanie Godard 117
Jacqueline I Goldstein 9
Javier González Peñas 107, 118
Ana González-Pinto 107, 119
Srihari Gopal 120
Jacob Gratten 3, 121
Michael F. Green 122, 123
Tiffany A. Greenwood 124
Olivier Guillin 125, 126, 127
Sinan Gülöksüz 128, 129
RAQUEL E. GUR 67
RUBEN C. GUR 67
Blanca Gutiérrez 130
Eric Hahn 131
Hakon Hakonarson 132
Vahram Haroutunian 90, 133, 134
Annette M. Hartmann 115
Carol Harvey 71, 135
Caroline Hayward 136
Frans A Henskens 137
Stefan Herms 138
Per Hoffmann 138
Daniel P. Howrigan 9, 139
Masashi IKEDA 140
Inge Joa 141
Antonio Juliá 142
Anna K. Kähler 49
Tony Kam Thong 143
Yoichiro Kamatani 144, 145
Sena Karachanak Yankova 146, 147
Oussama Kebir 77
Matthew C Keller 148
Brian J. Kelly 137
Andrey Khrunin 149
Sung Wan Kim 150
Janis KLOVINS 151
Nikolay Kondratiev 152
Bettina Konte 115
Julia Kraft 1, 153
Michiaki Kubo 154
Vaidutis Kučinskas 155
Zita Aušrelė Kučinskienė 155
Agung Kusumawardhani 156
Hana Kuzelova Ptackova 157
Stefano Landi 158
Laura C. Lazzeroni 159, 160
Phil H Lee 11, 161
Sophie E Legge 2
Douglas S. Lehrer 162
Rebecca Lencer 40
Bernard Lerer 163
Miaoxin Li 164
Jeffrey Lieberman 165
Gregory A. Light 124, 166
Chih-Min Liu 167, 168
Jouko Lönnqvist 169, 170
Carmel M Loughland 171
Jan Lubinski 172
Jurjen J. Luykx 128, 173, 174, 175
Amy Lynham 2
Milan Macek 176
Andrew MacKinnon 177, 178
Patrik K.E. Magnusson 49
Brion S Maher 179
Wolfgang Maier 180
Dolores Malaspina 90, 181
Jacques Mallet 182
STEPHEN R. MARDER 183
Sara Marsal 142
Alicia R. Martin 9, 11, 184
Lourdes Martorell 185
Manuel Mattheisen 21, 186, 187, 188
ROBERT W. MCCARLEY 189
Colm McDonald 190
JOHN J. McGRATH 31, 191, 192
Helena Medeiros 193, 194
Sandra Meier 186, 195
Bela Melegh 196
Ingrid Melle 15, 16
Raquelle I. Mesholam-Gately 18, 197
Andres Metspalu 198
Patricia T. Michie 199
Lili Milani 198
VIHRA MILANOVA 200
Marina Mitjans 44
Espen Molden 201, 202
Esther Molina 203
María Dolores Moltó 107, 204, 205
Valeria Mondelli 88, 206
Carmen Moreno 107, 118
Christopher P. Morley 207
Gerard Muntané 185, 208
Kieran C. Murphy 209
Inez Myin-Germeys 210
Igor Nenadic 211, 212
Gerald Nestadt 213
Liene Ņikitina Zaķe 151
Cristiano Noto 55, 56
Keith H. Nuechterlein 122
Niamh Louise Obrien 32
F. Anthony O??Neill 214
Sang Yun Oh 215, 216
Ann Olincy 217
Vanessa Kiyomi Ota 56, 218
Christos Pantelis 135, 219, 220, 221
GEORGE N. PAPADIMITRIOU 94
Mara Parellada 107, 118
Tiina Paunio 222, 223
Renata Pellegrino 132
Sathish Periyasamy 191, 224
Diana O. Perkins 225
Bruno Pfuhlmann 226
Pietiläinen Olli 11, 227, 228
Jonathan Pimm 32
David Porteous 229
Diego Quattrone 87, 88, 230
Digby Quested 231, 232
Allen D. Radant 233, 234
Antonio Rampino 50
Mark H. Rapaport 235
Anna Rautanen 143
Abraham Reichenberg 90
Cheryl Roe 236
Joshua L. Roffman 237
Julian Roth 238
Matthias Rothermundt 40
Bart P. F. Rutten 128
Safaa Saker Delye 239
Veikko Salomaa 240
Julio Sanjuán 107, 205, 241
Marcos Leite Santoro 56, 218
Adam Savitz 120
Ulrich Schall 65, 242
Rodney J Scott 64, 65, 243
Larry J. Seidman 18, 197
Sally Isabel Sharp 32
Jianxin Shi 244
LARRY J. SIEVER 90, 245
Engilbert Sigurdsson 246, 247
Kang Sim 248, 249, 250
Nora Skarabis 1
Petr Slominsky 149
Hon Cheong So 251, 252
Janet L. Sobell 193
Erik Söderman 30
Helen J. Stain 253, 254
Nils Eiel Steen 16, 255
Agnes A Steixner Kumar 44
Elisabeth Stögmann 256
William S. Stone 257, 258
Richard E. Straub 259
Fabian Streit 110
Eric Strengman 260
T Scott Stroup 165
Mythily Subramaniam 12, 81
Catherine A Sugar 122, 261
Jaana Suvisaari 240
Dragan M Svrakic 262
Neal R. Swerdlow 124
Jin P. Szatkiewicz 116
Thi Minh Tam Ta 263, 264
Atsushi Takahashi 265
Chikashi Terao 265
Florence Thibaut 266, 267
Draga Toncheva 146, 268
Paul A. Tooney 64, 65, 66
Silvia Torretta 50
Sarah Tosato 269
Gian Battista Tura 270
Bruce I. Turetsky 67
Alp Üçok 271
Arne Vaaler 272, 273
Juha Veijola 274, 275
John Waddington 276
Henrik Walter 1
Anna Waterreus 277, 278
Bradley T. Webb 43
Mark Weiser 279
Nigel M. Williams 2
Stephanie H. Witt 110
Brandon K Wormley 43
Jing Qin Wu 280
Zhida Xu 281
Robert Yolken 282
Clement C. Zai 283, 284
Wei Zhou 25
Feng Zhu 285, 286
Fritz Zimprich 256
Eşref Cem Atbaşoğlu 181, 287
Muhammad Ayub 288
Christian Benner 228
Alessandro Bertolino 50
DONALD W. BLACK 289
Nicholas J. Bray 2
Gerome Breen 87
Nancy G. Buccola 290
WILLIAM F. BYERLEY 291
Wei J. Chen 292, 293
C Robert Cloninger 262
Benedicto Crespo-Facorro 294, 295
Gary Donohoe 190
Robert Freedman 217
Cherrie Galletly 296, 297, 298
Michael J Gandal 23
Massimo Gennarelli 299, 300
David M. Hougaard 20, 61
Hai-Gwo Hwu 168, 301
Assen V. Jablensky 278
Steven A. McCarroll 11
Jennifer L. Moran 11, 237
Ole Mors 20, 302
Preben B. Mortensen 20, 31
Bertram Müller-Myhsok 303, 304, 305
Amanda L. Neil 306
Merete Nordentoft 20, 307
MICHELE T. PATO 308, 309
Tracey L Petryshen 161
Matti Pirinen 228, 310, 311
Ann E. Pulver 213
Thomas G. Schulze 188, 312, 313, 314
Jeremy M. Silverman 90, 245
Jordan W. Smoller 11, 161
Eli A. Stahl 315, 316, 317
Debby W. Tsuang 233, 234
Elisabet Vilella 185
Shi‐Heng Wang 318
Shuhua Xu 319, 320, 321
Nan Dai 322
Wenwen Qin 107, 118
D B Wildenauer 40, 220, 221
Feranindhya Agiananda 56, 218
Nurmiati Amir 20, 21, 22
Ronald Antoni 124, 166
Tiana Arsianti 323
Asmarahadi Asmarahadi 90
H Diatri 125, 126
Prianto Djatmiko 324
Siti Khalimah 325
Irmia Kusumadewi 326
Profitasari Kusumaningrum 327, 328
Petrin R Lukman 87, 88, 230
Martina W Nasrun 329
N S Safyuni 44
Prasetyawan Prasetyawan 2, 330
G Semen 198, 316
Kristiana Siste 7, 331, 332
Heriani Tobing 333, 334
Natalia Widiasih 238
Tjhin Wiguna 99, 100
D. Wulandari 326
None Evalina 335
A J Hananto 152
Joni H Ismoyo 336
T M Marini 49
Supiyani Henuhili 11, 227
Muhammad Reza 140
Suzy Yusnadewi 30, 255
ALEXEJ ABYZOV 62, 90
Schahram Akbarian 283, 284
Allison Ashley-Koch 333, 334
Harm van Bakel 2
Michael Breen 337, 338
Miguel Brown 77
Julien Bryois 82, 83
Becky Carlyle 339, 340
Alex Charney 13, 341, 342
Gerard Coetzee 159
Gregory Crawford 120
Stella Dracheva 343, 344
Prashant Emani 13, 341, 342
Peggy Farnham 345
Menachem Fromer 28
Timur Galeev 32
Mike Gandal 346
Mark Gerstein 277, 278
Gina Giase 190
Kiran Girdhar 191, 224
Fernando Goes 88
Kay Grennan 347
Mengting Gu 91
Gamze Gürsoy 348
Brittney Guerra 111, 349, 350
Gabriel Hoffman 11, 228, 351
THOMAS HYDE 308, 309
Andrew Jaffe 25, 352
Yan Jiang 43
Shan) Jiang 110
Amira Kefi 353, 354
Yunjung Kim 115
Robert Kitchen 287
Fides Lay 355, 356
Li Mingfeng 357, 358, 359
Donghoon Lee 360
Shuang Liu 361
Chunyu Liu 24, 25
Eugenio Mattei 19
Fabio Navarro 19
Xinghua Pan 362, 363
Mette A. Peters 364, 365
Dalila Pinto 366
Sirisha Pochareddy 259
Damon Polioudakis 367, 368, 369, 370
Michael Purcaro 371
Shaun Purcell 372, 373
Henry Pratt 372, 373, 374
Tim Reddy 2
Suhn Rhie 2
Panagiotis Roussos 26, 375
Joel Rozowsky 87, 88, 376
Stephan Sanders 377, 378
Nenad Sestan 3
Anurag Sethi 3, 4, 379
Xu Shi 378
Annie Shieh 15, 16
Vivek Swarup 43
Anna Szekely 2
Daifeng Wang 3, 191
Jonathan Warrell 9, 139, 228
Sherman Weissman 9, 11, 184
Zhiping Weng 9, 11
Kevin White 49, 116, 225
Jennifer Wiseman 1, 9, 11
Heather Witt 2
Hyejung Won 2
7
 
Department of Psychiatry, Veterans Affairs New York Harbor Healthcare System, New York, USA
8
 
Biogen, Cambridge, USA
12
 
Research Division, Institute of Mental Health, Singapore, Republic of Singapore
13
 
Division of Psychiatry Research, Zucker Hillside Hospital, Glen Oaks, USA
19
 
deCODE genetics, Amgen, Reykjavik, Iceland
20
 
The Lundbeck Foundation Initiative for Integrative Psychiatric Research (iPSYCH), Aarhus, Denmark
22
 
Center for Genomics and Personalized Medicine, Aarhus, Denmark
33
 
Comedicum Lindwurmhof, Munich, Germany
63
 
Altrecht, General Menthal Health Care, Utrecht, The Netherlands
80
 
Castle Peak Hospital, Hong Kong, China
85
 
Department of Psychiatry, Irmandade da Santa Casa de Misericórdia de São Paulo, São Paulo, Brazil
92
 
Cambridge Health Alliance, Cambridge, USA
93
 
Sheppard Pratt Health System, Baltimore, USA
99
 
Center for Psychiatric Genetics, NorthShore University HealthSystem, Evanston, USA
101
 
Department of Mental Health, ASL Rome 1, Rome, Italy
113
 
Barnet, Enfield and Haringey Mental Health NHS Trust, St Ann’s Hospital, London, UK
120
 
Neuroscience Therapeutic Area, Janssen Research and Development, Titusville, USA
123
 
VA Greater Los Angeles Healthcare System, Los Angeles, USA
126
 
Centre Hospitalier du Rouvray, Rouen, France
134
 
Mental Illness Research Clinical and Education Center (MIRECC), JJ Peters VA Medical Center, New York, USA
135
 
Northwestern Mental Health, Melbourne, Australia
151
 
Latvian Biomedical Research and Study centre, Riga, Latvia
166
 
VISN 22, Mental Illness Research, Education and Clinical Center (MIRECC), VA San Diego Healthcare System, San Diego, USA
175
 
Second Opinion Outpatient Clinic, GGNet Mental Health, Warnsveld, the Netherlands
182
 
Asfalia Biologics, iPEPS-ICM, Hôpital Universitaire de la Pitié-Salpêtrière, Paris, France
189
 
VA Boston Health Care System, Brockton, USA
192
 
Queensland Centre for Mental Health Research, The Park Centre for Mental Health, Brisbane, Australia
200
 
Psychiatric Clinic, Alexandrovska University Hospital, Sofia, Bulgaria
226
 
Clinic of Psychiatry and Psychotherapy, Weißer Hirsch, Dresden, Germany
230
 
South London and Maudsley NHS Mental Health Foundation Trust, London, UK
234
 
VA Puget Sound Health Care System, Seattle, USA
239
 
Généthon, Evry, France
242
 
Priority Centre for Brain and Mental Health Research, University of Newcastle, Mater Hospital, McAuley Centre, Newcastle, Australia
243
 
Division of Molecular Medicine, NSW Health Pathology North, Newcastle, Australia
245
 
James J. Peters VA Medical Center, Bronx, USA
248
 
West Region, Institute of Mental Health, Singapore, Singapore
258
 
Massachusetts Mental Health Center, Boston, USA
268
 
Bulgarian Academy of Science, Sofia, Bulgaria
281
 
Department of Psychiatry, GGz Centraal, Utrecht, The Netherlands
292
 
Center for Neuropsychiatric Research, National Health Research Institutes, Zhunan Town, Taiwan
297
 
Ramsay Health Care (SA) Mental Health, Adelaide, Australia
298
 
Northern Adelaide Local Health Network, Adelaide, Australia
304
 
Munich Cluster for Systems Neurology, Munich, Germany
317
 
Regeneron Genetics Center, Orange, USA
321
 
Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, China
325
 
Eli Lilly and Company, Windlesham, UK
331
 
Department of Psychiatry, Phoenix VA Healthcare System, Phoenix, USA
332
 
Banner-University Medical Center, Phoenix, USA
339
 
Department of Psychosis, Institute of Mental Health, Singapore, Singapore
342
 
Department of Psychiatry, Zucker School of Medicine at Hofstra/Northwell, Hempstead, USA
348
 
Early Clinical Development, Pfizer Worldwide Research and Development, Groton, USA
370
 
The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Copenhagen, Denmark
375
 
Mental Illness Research, Education, and Clinical Center (VISN 2 South), James J. Peters VA Medical Center, New York, USA
379
 
Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, China
Publication typeJournal Article
Publication date2022-04-08
scimago Q1
wos Q1
SJR18.288
CiteScore78.1
Impact factor48.5
ISSN00280836, 14764687
Multidisciplinary
Abstract
Schizophrenia has a heritability of 60–80%1, much of which is attributable to common risk alleles. Here, in a two-stage genome-wide association study of up to 76,755 individuals with schizophrenia and 243,649 control individuals, we report common variant associations at 287 distinct genomic loci. Associations were concentrated in genes that are expressed in excitatory and inhibitory neurons of the central nervous system, but not in other tissues or cell types. Using fine-mapping and functional genomic data, we identify 120 genes (106 protein-coding) that are likely to underpin associations at some of these loci, including 16 genes with credible causal non-synonymous or untranslated region variation. We also implicate fundamental processes related to neuronal function, including synaptic organization, differentiation and transmission. Fine-mapped candidates were enriched for genes associated with rare disruptive coding variants in people with schizophrenia, including the glutamate receptor subunit GRIN2A and transcription factor SP4, and were also enriched for genes implicated by such variants in neurodevelopmental disorders. We identify biological processes relevant to schizophrenia pathophysiology; show convergence of common and rare variant associations in schizophrenia and neurodevelopmental disorders; and provide a resource of prioritized genes and variants to advance mechanistic studies. A genome-wide association study including over 76,000 individuals with schizophrenia and over 243,000 control individuals identifies common variant associations at 287 genomic loci, and further fine-mapping analyses highlight the importance of genes involved in synaptic processes.
Found 
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Trubetskoy V. et al. Mapping genomic loci implicates genes and synaptic biology in schizophrenia // Nature. 2022. Vol. 604. No. 7906. pp. 502-508.
GOST all authors (up to 50) Copy
Trubetskoy V. et al. Mapping genomic loci implicates genes and synaptic biology in schizophrenia // Nature. 2022. Vol. 604. No. 7906. pp. 502-508.
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@article{2022_Trubetskoy,
author = {Vassily Trubetskoy and Antonio F. Pardiñas and TING QI and Georgia Panagiotaropoulou and Swapnil Awasthi and Tim B. Bigdeli and Chen Chia-Yen and Charlotte A. Dennison and Lynsey S. Hall and Max Lam and Kyoko Watanabe and Oleksandr Frei and Tian Ge and Janet C Harwood and Sigurdur Magnusson and Alexander L. Richards and Julia Sidorenko and Yang Wu and Jian Zeng and JAKOB GROVE and Minsoo Kim and Zhiqiang Li and Georgios Voloudakis and Wen Zhang and Mark Adams and Ingrid Agartz and Elizabeth G. Atkinson and Esben Agerbo and Mariam Al Eissa and Margot Albus and Madeline Alexander and Behrooz Z. Alizadeh and Köksal Alptekin and Thomas D. Als and Farooq Amin and Volker Arolt and Manuel Arrojo and Lavinia Athanasiu and Maria-Helena Azevedo and Silviu A Bacanu and Nicholas J. Bass and Martin Begemann and Richard A. Belliveau and Judit Bene and Beben Benyamin and Sarah E. Bergen and Giuseppe Blasi and Julio Bobes and Stefano Bonassi and Alice Braun and others},
title = {Mapping genomic loci implicates genes and synaptic biology in schizophrenia},
journal = {Nature},
year = {2022},
volume = {604},
publisher = {Springer Nature},
month = {apr},
url = {https://www.nature.com/articles/s41586-022-04434-5},
number = {7906},
pages = {502--508},
doi = {10.1038/s41586-022-04434-5}
}
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MLA Copy
Trubetskoy, Vassily, et al. “Mapping genomic loci implicates genes and synaptic biology in schizophrenia.” Nature, vol. 604, no. 7906, Apr. 2022, pp. 502-508. https://www.nature.com/articles/s41586-022-04434-5.