том 53 издание 6 страницы 840-860

The trans-ancestral genomic architecture of glycemic traits

Ji Chen 1, 2
Cassandra N Spracklen 3, 4
Gaëlle Marenne 2, 5
Arushi Varshney 6
Laura J. Corbin 7, 8
Jian'an Luan 9
Sara M Willems 9
Ying Wu 3
Xiaoshuai Zhang 9, 10
Momoko Horikoshi 11, 12, 13
Thibaud S. Boutin 14
Reedik Mägi 15
Johannes Waage 16
Ruifang Li-Gao 17
Kei Hang Katie Chan 18, 19, 20
JIE YAO 21
Mila D Anasanti 22
Audrey Y. Chu 23
Annique Claringbould 24
Jani Heikkinen 22
Jaeyoung Hong 25
Jouke-Jan Hottenga 26, 27
Shaofeng Huo 28
Marika A. Kaakinen 22, 29
Tin Louie 30
Winfried März 31, 32, 33
Hortensia Moreno-Macías 34
Anne Ndungu 12
Sarah C Nelson 30
Ilja M. Nolte 35
Kari E. North 36
Chelsea K Raulerson 3
Debashree Ray 37
Rebecca Rohde 36
Denis Rybin 25
Claudia Schurmann 38, 39
Xueling Sim 40, 41, 42
Lorraine Southam 2, 43
Isobel D. Stewart 9
Carol A. Wang 44
Yujie Wang 36
Peitao Wu 25
Weihua Zhang 45, 46
Tarunveer S Ahluwalia 16, 47, 48
Emil V R Appel 49
Lawrence F. Bielak 50
Jennifer A. Brody 51
Noël P. Burtt 52
Claudia P. Cabrera 53, 54
Brian E. Cade 55, 56
Jin Fang Chai 40
Xiaoran Chai 57, 58
Li-Ching Chang 59
Chien-Hsiun Chen 59
Brian H Chen 60
Kumaraswamy Naidu Chitrala 61
Yen-Feng Chiu 62
Graciela E. Delgado 33
Ayse Demirkan 29, 63
Qing Duan 3, 64
Jorgen Engmann 65
Segun A Fatumo 66, 67, 68
Javier Gayán 69
Franco Giulianini 23
Jung Ho Gong 18
Stefan Gustafsson 70
Yang Hai 71
Fernando P. Hartwig 7, 72
Jing He 73
Yoriko Heianza 74
Tao Huang 75
Alicia Huerta Chagoya 76, 77
MI YEONG HWANG 78
RICHARD A. JENSEN 51
Takahisa Kawaguchi 79
Katherine A Kentistou 80, 81
Young Jin Kim 78
Marcus E. Kleber 33
Ishminder K Kooner 46
Shuiqing Lai 18
Leslie A Lange 82
Carl D Langefeld 83
Marie Lauzon 21
Man Li 84
Symen Ligthart 63
Jun Liu 63, 85
Marie Loh 45, 86
Jirong Long 87
Valeriya Lyssenko 88, 89
Massimo Mangino 90, 91
Carola Marzi 92, 93
May E. Montasser 94
Abhishek Nag 12
Masahiro Nakatochi 95
Damia Noce 96
Raymond Noordam 97
Giorgio Pistis 98
Michael Preuss 38, 99
Laura Raffield 3
Laura J. Rasmussen-Torvik 100
Stephen S Rich 101, 102
Neil R. Robertson 11, 12
Rico Rueedi 103, 104
Kathleen Ryan 94
Serena Sanna 24, 98
Richa Saxena 105, 106, 107
Katharina E. Schraut 80, 81
Bengt Sennblad 108
Kazuya Setoh 79
Albert V. Smith 109, 110
Thomas Sparsø 49
Rona J Strawbridge 111, 112
Fumihiko Takeuchi 113
Jingyi Tan 21
Stella Trompet 97, 114
Niek Verweij 115, 116
Mandy Vogel 117
Heming Wang 55, 56
Chaolong Wang 118, 119
Nan Wang 120, 121
Helen R Warren 53, 54
Wanqing Wen 87
Tom Wilsgaard 122
Andrew Wong 123
Andrew R. Wood 1
Tian Xie 35
Mohammad Hadi Zafarmand 124, 125
Jing Hua Zhao 126
Wei Zhao 50
Najaf Amin 63, 85
Zorayr Arzumanyan 21
Arne Astrup 127
Stephan J.L. Bakker 128
Damiano Baldassarre 129, 130
Marian Beekman 131
Richard N. Bergman 132
Alain Bertoni 133
Matthias Blüher 134
Lori L. Bonnycastle 135
Stefan R. Bornstein 136
Donald W Bowden 137
Qiuyin Cai 73
Archie Campbell 138, 139
Harry Campbell 80
Yi-Cheng Chang 59, 140, 141
Abbas Dehghan 63
Shufa Du 142
Gudny Eiriksdottir 110
Aliki-Eleni Farmaki 143, 144
Mattias Frånberg 112
Christian Fuchsberger 96
Yutang Gao 145
Anette P Gjesing 49
Anuj Goel 12, 146
Sohee Han 78
Catharina A Hartman 147
Christian Herder 148, 149, 150
Andrew A. Hicks 96
Chang-Hsun Hsieh 151, 152
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Sahoko Ichihara 154
Michiya Igase 155
M. Arfan Ikram 63
W. Craig Johnson 30
Marit E. Jørgensen 47, 156
Peter K Joshi 80
Rita R. Kalyani 157
Fouad R Kandeel 158
Tomohiro Katsuya 159, 160
Chiea Chuen Khor 119
Wieland Kiess 117
Ivana Kolcic 161
Teemu Kuulasmaa 162
Johanna Kuusisto 163
Kristi Läll 15
Kelvin Lam 21
Deborah A. Lawlor 7, 8
Nanette R. Lee 164, 165
Rozenn N. Lemaitre 51
Honglan Li 166
Shih-Yi Lin 167, 168
Jaana Lindström 169
Allan Linneberg 170, 171
Jianjun Liu 119, 172
Carlos Lorenzo 173
Tatsuaki Matsubara 174
Fumihiko Matsuda 79
Geltrude Mingrone 175
Simon Mooijaart 97
Sanghoon Moon 78
Toru Nabika 176
Girish N Nadkarni 38
Jerry L. Nadler 177
Mari Nelis 15
Matt J Neville 11, 178
Jill M. Norris 179
Yasumasa Ohyagi 180
Annette Peters 93, 181, 182
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Ozren Polašek 161, 183
Qibin Qi 184
Dennis Raven 147
Dermot F. Reilly 185
Alex Reiner 186
Fernando Rivideneira 187
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Igor Rudan 188
Charumathi Sabanayagam 57, 189
Kevin Sandow 21
Naveed Sattar 190
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Jinxiu Shi 192
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Kent D. Taylor 21
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Tao Wang 184
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Tatijana Zemunik 201
Gonçalo R. Abecasis 42
Linda S Adair 142, 202
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Lawrence J. Beilin 211
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Corri Black 213
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Bernhard O. Böhm 216, 217
Klaus Bønnelykke 16
D.I. Boomsma 26, 27
Erwin P. Bottinger 38, 218, 219
Thomas A. Buchanan 121, 220, 221
Mickaël Canouil 222, 223
Mark J. Caulfield 53, 54
John C Chambers 45, 46, 86, 224, 225
Daniel I. Chasman 23, 226
Yii-Der Ida Chen 21
Ching-Yu Cheng 57, 189
Francis S. Collins 135
Adolfo Correa 227
Francesco Cucca 98
George Dedoussis 228
Sölve Elmståhl 229
Michele K. Evans 230
Ele Ferrannini 231
Luigi Ferrucci 232
Jose C Florez 107, 233, 234
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Timothy M. Frayling 1
Philippe Froguel 222, 223, 236
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Niels Grarup 49
Sameline Grimsgaard 122
Leif Groop 239, 240
Vilmundur Gudnason 110, 241
Xiuqing Guo 21
Anders Hamsten 112
Torben Hansen 49
Caroline Hayward 194
Susan R. Heckbert 242
Bernardo L. Horta 72
Wei Huang 192
Erik Ingelsson 243
Pankow S James 244
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J. Wouter Jukema 114, 252
Pontiano Kaleebu 253
Robert Kaplan 184, 186
Sharon L. R. Kardia 50
Norihiro Kato 113
Sirkka M Keinänen Kiukaanniemi 254, 255
Bong-Jo Kim 78
Mika Kivimaki 256
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Antje Körner 117
Peter Kovacs 134, 261
Diana Kuh 123
Meena Kumari 262
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Markku Laakso 163
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Karin Leander 267
Huaixing Li 28
Xu Lin 28
Lars Lind 268
Cecilia Lindgren 12, 269, 270
Simin Liu 18
Ruth J.F. Loos 38, 99
Patrik K.E. Magnusson 271
Anubha Mahajan 12, 272
Andres Metspalu 15
Dennis O. Mook-Kanamori 17, 273
Trevor A. Mori 211
Patricia B. Munroe 53, 54
Inger Njølstad 122
Jeffrey R O'Connell 94
Albertine J Oldehinkel 147
Ken K. Ong 9
SANDOSH PADMANABHAN 274
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Nicholette D. Palmer 137
Oluf Pedersen 49
Craig E. Pennell 44
David J. Porteous 138, 276
Peter P. Pramstaller 96
Michael A Province 208
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Qi Lu 278
LESLIE J. RAFFEL 279
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Susan Redline 55, 56
Paul M Ridker 23, 280
Frits R. Rosendaal 17
Timo E Saaristo 281, 282
Manjinder Sandhu 283
Jouko Saramies 284
Neil Schneiderman 285
Peter Schwarz 93, 136, 286
Laura J. Scott 41, 42
Elizabeth Selvin 37
Peter Sever 260
Xiao-Ou Shu 87
P. Eline Slagboom 131
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Blair H. Smith 287
Harold Snieder 35
Tamar Sofer 234, 288
Thorkild I. A. Sørensen 7, 8, 49, 289
Tim D. Spector 90
Alice Stanton 290
Claire J. Steves 90, 291
Michael Stumvoll 134
Liang Sun 28
Yasuharu Tabara 79
E Shyong Tai 40, 172, 292
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Anke Tönjes 134
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Teresa Tusie 77, 296
Matti Uusitupa 297
Veronique Vitart 194
Peter Vollenweider  298
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Mark Walker 300
Ya X Wang 250
Nick J. Wareham 9
Richard M. Watanabe 120, 121, 221
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James F. Wilson 80, 194
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Jer-Yuarn Wu 59
Anny H. Xiang 303
Lisa R Yanek 210
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Mitsuhiro YOKOTA 305
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Jerome I. Rotter 21
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Mark I McCarthy 11, 12, 178, 272, 308
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Robert A Scott 9
Inga Prokopenko 22, 29
Aaron Leong 226, 310, 311
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Karen L Mohlke 3
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Eleanor Wheeler 2, 9
Andrew P Morris 12, 313, 314, 315
I Barroso 1, 2, 9
14
 
Medical Research Council Human Genetics Unit, Institute for Genetics and Molecular Medicine, Edinburgh, UK
31
 
SYNLAB Academy, SYNLAB Holding Deutschland GmbH, Mannheim, Germany
46
 
Department of Cardiology, Ealing Hospital, London North West Healthcare NHS Trust, London, UK
62
 
Institute of Population Health Sciences, National Health Research Institutes, Miaoli, Taiwan
63
 
Department of Epidemiology, Erasmus Medical Center, Rotterdam, the Netherlands
66
 
Uganda Medical Informatics Centre (UMIC), MRC/UVRI and London School of Hygiene & Tropical Medicine (Uganda Research Unit), Entebbe, Uganda
68
 
H3Africa Bioinformatics Network (H3ABioNet) Node, Centre for Genomics Research and Innovation, NABDA/FMST, Abuja, Nigeria
69
 
Bioinfosol, Sevilla, Spain
76
 
Molecular Biology and Genomic Medicine Unit, National Council for Science and Technology, Mexico City, Mexico
78
 
Division of Genome Science, Department of Precision Medicine, National Institute of Health, Cheongju, South Korea
91
 
NIHR Biomedical Research Centre, Guy’s and St Thomas’ NHS Foundation Trust, London, UK
93
 
German Center for Diabetes Research (DZD), Neuherberg, Germany
96
 
Institute for Biomedicine, EURAC Research, Bolzano, Italy
98
 
Istituto Di Ricerca Genetica E Biomedica (IRGB), Consiglio Nazionale Delle Ricerche (CNR), Monserrato, Italy
110
 
Icelandic Heart Association, Kopavogur, Iceland
116
 
Genomics plc, Oxford, UK
145
 
Department of Epidemiology, Shanghai Cancer Institute, Shanghai, China
150
 
German Center for Diabetes Research (DZD), Düsseldorf, Germany
151
 
Internal Medicine, Endocrine and Metabolism, Tri-Service General Hospital, Taipei, Taiwan
162
 
Institute of Biomedicine, Bioinformatics Center, Univeristy of Eastern Finland, Kuopio, Finland
164
 
USC-Office of Population Studies Foundation, University of San Carlos, Cebu City, the Philippines
165
 
Department of Anthropology, Sociology and History, University of San Carlos, Cebu City, the Philippines
167
 
Center for Geriatrics and Gerontology, Taichung Veterans General Hospital, Taichung, Taiwan
170
 
Center for Clinical Research and Prevention, Bispebjerg and Frederiksberg Hospital, Copenhagen, Denmark
183
 
Gen-Info, Zagreb, Croatia
185
 
Genetics and Pharmacogenomics, Merck Sharp & Dohme, Kenilworth, USA
187
 
Department of Internal medicine, Erasmus Medical Center, Rotterdam, The Netherlands
192
 
Department of Genetics, Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai (CHGC) and Shanghai Academy of Science & Technology (SAST), Shanghai, China
193
 
Sarepta Therapeutics, Cambridge, USA
197
 
Department of Medicine, Bornholms Hospital, Rønne, Denmark
251
 
Institute of Molecular and Clinical Ophthalmology Basel IOB, Basel, Switzerland
253
 
MRC/UVRI and LSHTM (Uganda Research Unit), Entebbe, Uganda
259
 
Minerva Foundation Institute for Medical Research, Helsinki, Finland
266
 
Foundation for Research in Health Exercise and Nutrition, Kuopio Research Institute of Exercise Medicine, Kuopio, Finland
272
 
Genentech, South San Francisco, USA
280
 
Havard Medical School, Boston, USA
281
 
Tampere, Finnish Diabetes Association, Tampere, Finland
282
 
Pirkanmaa Hospital District, Tampere, Finland
284
 
South Karelia Central Hospital, Lappeenranta, Finland
286
 
Paul Langerhans Institute Dresden of the Helmholtz Center Munich, University Hospital and Faculty of Medicine, Dresden, Germany
291
 
Department of Ageing and Health, Guy’s and St Thomas’ NHS Foundation Trust, London, UK
303
 
Department of Research and Evaluation, Kaiser Permanente of Southern California, Pasadena, USA
Тип публикацииJournal Article
Дата публикации2021-05-31
scimago Q1
wos Q1
БС1
SJR16.586
CiteScore45.1
Impact factor29.0
ISSN10614036, 15461718
Genetics
Краткое описание
Glycemic traits are used to diagnose and monitor type 2 diabetes and cardiometabolic health. To date, most genetic studies of glycemic traits have focused on individuals of European ancestry. Here we aggregated genome-wide association studies comprising up to 281,416 individuals without diabetes (30% non-European ancestry) for whom fasting glucose, 2-h glucose after an oral glucose challenge, glycated hemoglobin and fasting insulin data were available. Trans-ancestry and single-ancestry meta-analyses identified 242 loci (99 novel; P < 5 × 10−8), 80% of which had no significant evidence of between-ancestry heterogeneity. Analyses restricted to individuals of European ancestry with equivalent sample size would have led to 24 fewer new loci. Compared with single-ancestry analyses, equivalent-sized trans-ancestry fine-mapping reduced the number of estimated variants in 99% credible sets by a median of 37.5%. Genomic-feature, gene-expression and gene-set analyses revealed distinct biological signatures for each trait, highlighting different underlying biological pathways. Our results increase our understanding of diabetes pathophysiology by using trans-ancestry studies for improved power and resolution. A trans-ancestry meta-analysis of GWAS of glycemic traits in up to 281,416 individuals identifies 99 novel loci, of which one quarter was found due to the multi-ancestry approach, which also improves fine-mapping of credible variant sets.
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Chen J. et al. The trans-ancestral genomic architecture of glycemic traits // Nature Genetics. 2021. Vol. 53. No. 6. pp. 840-860.
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Chen J. et al. The trans-ancestral genomic architecture of glycemic traits // Nature Genetics. 2021. Vol. 53. No. 6. pp. 840-860.
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@article{2021_Chen,
author = {Ji Chen and Cassandra N Spracklen and Gaëlle Marenne and Arushi Varshney and Laura J. Corbin and Jian'an Luan and Sara M Willems and Ying Wu and Xiaoshuai Zhang and Momoko Horikoshi and Thibaud S. Boutin and Reedik Mägi and Johannes Waage and Ruifang Li-Gao and Kei Hang Katie Chan and JIE YAO and Mila D Anasanti and Audrey Y. Chu and Annique Claringbould and Jani Heikkinen and Jaeyoung Hong and Jouke-Jan Hottenga and Shaofeng Huo and Marika A. Kaakinen and Tin Louie and Winfried März and Hortensia Moreno-Macías and Anne Ndungu and Sarah C Nelson and Ilja M. Nolte and Kari E. North and Chelsea K Raulerson and Debashree Ray and Rebecca Rohde and Denis Rybin and Claudia Schurmann and Xueling Sim and Lorraine Southam and Isobel D. Stewart and Carol A. Wang and Yujie Wang and Peitao Wu and Weihua Zhang and Tarunveer S Ahluwalia and Emil V R Appel and Lawrence F. Bielak and Jennifer A. Brody and Noël P. Burtt and Claudia P. Cabrera and Brian E. Cade and others},
title = {The trans-ancestral genomic architecture of glycemic traits},
journal = {Nature Genetics},
year = {2021},
volume = {53},
publisher = {Springer Nature},
month = {may},
url = {https://doi.org/10.1038/s41588-021-00852-9},
number = {6},
pages = {840--860},
doi = {10.1038/s41588-021-00852-9}
}
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Chen, Ji, et al. “The trans-ancestral genomic architecture of glycemic traits.” Nature Genetics, vol. 53, no. 6, May. 2021, pp. 840-860. https://doi.org/10.1038/s41588-021-00852-9.