Open Access
Open access
volume 14 issue 1 publication number 2651

A novel preliminary metabolomic panel for IHD diagnostics and pathogenesis

S S Markin 1
E A Ponomarenko 1
Yu A Romashova 1
T O Pleshakova 1
S.V. Ivanov 1
F N Bedretdinov 1
S. L. Konstantinov 2
A. A. Nizov 3
A. G. Koledinskii 4
A I Girivenko 3
K M Shestakova 5
P A Markin 5
M V Kozhevnikova 7
Zh. Yu. Chefranova 2
Publication typeJournal Article
Publication date2024-02-01
scimago Q1
wos Q1
SJR0.874
CiteScore6.7
Impact factor3.9
ISSN20452322
Multidisciplinary
Abstract

Cardiovascular disease (CVD) represents one of the main causes of mortality worldwide and nearly a half of it is related to ischemic heart disease (IHD). The article represents a comprehensive study on the diagnostics of IHD through the targeted metabolomic profiling and machine learning techniques. A total of 112 subjects were enrolled in the study, consisting of 76 IHD patients and 36 non-CVD subjects. Metabolomic profiling was conducted, involving the quantitative analysis of 87 endogenous metabolites in plasma. A novel regression method of age-adjustment correction of metabolomics data was developed. We identified 36 significantly changed metabolites which included increased cystathionine and dimethylglycine and the decreased ADMA and arginine. Tryptophan catabolism pathways showed significant alterations with increased levels of serotonin, intermediates of the kynurenine pathway and decreased intermediates of indole pathway. Amino acid profiles indicated elevated branched-chain amino acids and increased amino acid ratios. Short-chain acylcarnitines were reduced, while long-chain acylcarnitines were elevated. Based on these metabolites data, machine learning algorithms: logistic regression, support vector machine, decision trees, random forest, and gradient boosting, were used for IHD diagnostic models. Random forest demonstrated the highest accuracy with an AUC of 0.98. The metabolites Norepinephrine; Xanthurenic acid; Anthranilic acid; Serotonin; C6-DC; C14-OH; C16; C16-OH; GSG; Phenylalanine and Methionine were found to be significant and may serve as a novel preliminary panel for IHD diagnostics. Further studies are needed to confirm these findings.

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Markin S. S. et al. A novel preliminary metabolomic panel for IHD diagnostics and pathogenesis // Scientific Reports. 2024. Vol. 14. No. 1. 2651
GOST all authors (up to 50) Copy
Markin S. S., Ponomarenko E. A., Romashova Yu. A., Pleshakova T. O., Ivanov S., Bedretdinov F. N., Konstantinov S. L., Nizov A. A., Koledinskii A. G., Girivenko A. I., Shestakova K. M., Markin P. A., Moskaleva N. E., Kozhevnikova M. V., Chefranova Z. Y., Appolonova S. A. A novel preliminary metabolomic panel for IHD diagnostics and pathogenesis // Scientific Reports. 2024. Vol. 14. No. 1. 2651
RIS |
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RIS Copy
TY - JOUR
DO - 10.1038/s41598-024-53215-9
UR - https://doi.org/10.1038/s41598-024-53215-9
TI - A novel preliminary metabolomic panel for IHD diagnostics and pathogenesis
T2 - Scientific Reports
AU - Markin, S S
AU - Ponomarenko, E A
AU - Romashova, Yu A
AU - Pleshakova, T O
AU - Ivanov, S.V.
AU - Bedretdinov, F N
AU - Konstantinov, S. L.
AU - Nizov, A. A.
AU - Koledinskii, A. G.
AU - Girivenko, A I
AU - Shestakova, K M
AU - Markin, P A
AU - Moskaleva, N E
AU - Kozhevnikova, M V
AU - Chefranova, Zh. Yu.
AU - Appolonova, S A
PY - 2024
DA - 2024/02/01
PB - Springer Nature
IS - 1
VL - 14
PMID - 38302683
SN - 2045-2322
ER -
BibTex
Cite this
BibTex (up to 50 authors) Copy
@article{2024_Markin,
author = {S S Markin and E A Ponomarenko and Yu A Romashova and T O Pleshakova and S.V. Ivanov and F N Bedretdinov and S. L. Konstantinov and A. A. Nizov and A. G. Koledinskii and A I Girivenko and K M Shestakova and P A Markin and N E Moskaleva and M V Kozhevnikova and Zh. Yu. Chefranova and S A Appolonova},
title = {A novel preliminary metabolomic panel for IHD diagnostics and pathogenesis},
journal = {Scientific Reports},
year = {2024},
volume = {14},
publisher = {Springer Nature},
month = {feb},
url = {https://doi.org/10.1038/s41598-024-53215-9},
number = {1},
pages = {2651},
doi = {10.1038/s41598-024-53215-9}
}