Open Access
Augmented prediction of vertebral collapse after osteoporotic vertebral compression fractures through parameter-efficient fine-tuning of biomedical foundation models
Sibeen Kim
1
,
Inkyeong Kim
2, 3
,
Woon Tak Yuh
4, 5
,
Sangmin Han
6
,
Choonghyo Kim
2, 3
,
Young San Ko
7, 8
,
Wonwoo Cho
9, 10
,
Sung Bae Park
11, 12
2
4
8
Department of Neurosurgery, School of Medicine, Kyungbook National university, Daegu, Republic of Korea
|
10
Letsur Inc, Seoul, Republic of Korea
|
12
Department of Neurosurgery, Seoul National Boramae Medical Center, Seoul, Republic of Korea
|
Publication type: Journal Article
Publication date: 2024-12-30
scimago Q1
wos Q1
SJR: 0.874
CiteScore: 6.7
Impact factor: 3.9
ISSN: 20452322
PubMed ID:
39738257
Abstract
Vertebral collapse (VC) following osteoporotic vertebral compression fracture (OVCF) often requires aggressive treatment, necessitating an accurate prediction for early intervention. This study aimed to develop a predictive model leveraging deep neural networks to predict VC progression after OVCF using magnetic resonance imaging (MRI) and clinical data. Among 245 enrolled patients with acute OVCF, data from 200 patients were used for the development dataset, and data from 45 patients were used for the test dataset. To construct an accurate prediction model, we explored two backbone architectures: convolutional neural networks and vision transformers (ViTs), along with various pre-trained weights and fine-tuning methods. Through extensive experiments, we built our model by performing parameter-efficient fine-tuning of a ViT model pre-trained on a large-scale biomedical dataset. Attention rollouts indicated that the contours and internal features of the compressed vertebral body were critical in predicting VC with this model. To further improve the prediction performance of our model, we applied the augmented prediction strategy, which uses multiple MRI frames and achieves a significantly higher area under the curve (AUC). Our findings suggest that employing a biomedical foundation model fine-tuned using a parameter-efficient method, along with augmented prediction, can significantly enhance medical decisions.
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Total citations:
4
Citations from 2024:
3
(100%)
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GOST
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Kim S. et al. Augmented prediction of vertebral collapse after osteoporotic vertebral compression fractures through parameter-efficient fine-tuning of biomedical foundation models // Scientific Reports. 2024. Vol. 14. No. 1. 31820
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Kim S., Kim I., Yuh W. T., Han S., Kim C., Ko Y. S., Cho W., Park S. B. Augmented prediction of vertebral collapse after osteoporotic vertebral compression fractures through parameter-efficient fine-tuning of biomedical foundation models // Scientific Reports. 2024. Vol. 14. No. 1. 31820
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RIS
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TY - JOUR
DO - 10.1038/s41598-024-82902-w
UR - https://www.nature.com/articles/s41598-024-82902-w
TI - Augmented prediction of vertebral collapse after osteoporotic vertebral compression fractures through parameter-efficient fine-tuning of biomedical foundation models
T2 - Scientific Reports
AU - Kim, Sibeen
AU - Kim, Inkyeong
AU - Yuh, Woon Tak
AU - Han, Sangmin
AU - Kim, Choonghyo
AU - Ko, Young San
AU - Cho, Wonwoo
AU - Park, Sung Bae
PY - 2024
DA - 2024/12/30
PB - Springer Nature
IS - 1
VL - 14
PMID - 39738257
SN - 2045-2322
ER -
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BibTex (up to 50 authors)
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@article{2024_Kim,
author = {Sibeen Kim and Inkyeong Kim and Woon Tak Yuh and Sangmin Han and Choonghyo Kim and Young San Ko and Wonwoo Cho and Sung Bae Park},
title = {Augmented prediction of vertebral collapse after osteoporotic vertebral compression fractures through parameter-efficient fine-tuning of biomedical foundation models},
journal = {Scientific Reports},
year = {2024},
volume = {14},
publisher = {Springer Nature},
month = {dec},
url = {https://www.nature.com/articles/s41598-024-82902-w},
number = {1},
pages = {31820},
doi = {10.1038/s41598-024-82902-w}
}