Open Access
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
I-Min A Chen
1
,
Ken Chu
1
,
Krishnaveni Palaniappan
1
,
Anna Ratner
1
,
Jinghua Huang
1
,
Marcel Huntemann
1
,
Patrick Hajek
1
,
Stephan Ritter
1
,
Neha Varghese
1
,
Rekha Seshadri
1
,
Simon Roux
1
,
Tanja Woyke
1
,
Natalia Ivanova
1
,
Nikos C. Kyrpides
1
Publication type: Journal Article
Publication date: 2020-10-29
scimago Q1
wos Q1
SJR: 7.776
CiteScore: 31.7
Impact factor: 13.1
ISSN: 03051048, 13624962
PubMed ID:
33119741
Genetics
Abstract
The Integrated Microbial Genomes & Microbiomes system (IMG/M: https://img.jgi.doe.gov/m/) contains annotated isolate genome and metagenome datasets sequenced at the DOE’s Joint Genome Institute (JGI), submitted by external users, or imported from public sources such as NCBI. IMG v 6.0 includes advanced search functions and a new tool for statistical analysis of mixed sets of genomes and metagenome bins. The new IMG web user interface also has a new Help page with additional documentation and webinar tutorials to help users better understand how to use various IMG functions and tools for their research. New datasets have been processed with the prokaryotic annotation pipeline v.5, which includes extended protein family assignments.
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Metrics
411
Total citations:
411
Citations from 2024:
104
(25.31%)
Cite this
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Cite this
GOST
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Chen I. A. et al. The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities // Nucleic Acids Research. 2020. Vol. 49. No. D1. p. D751-D763.
GOST all authors (up to 50)
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Chen I. A., Chu K., Palaniappan K., Ratner A., Huang J., Huntemann M., Hajek P., Ritter S., Varghese N., Seshadri R., Roux S., Woyke T., Eloe Fadrosh E. A., Ivanova N., Kyrpides N. C. The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities // Nucleic Acids Research. 2020. Vol. 49. No. D1. p. D751-D763.
Cite this
RIS
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TY - JOUR
DO - 10.1093/nar/gkaa939
UR - https://doi.org/10.1093/nar/gkaa939
TI - The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
T2 - Nucleic Acids Research
AU - Chen, I-Min A
AU - Chu, Ken
AU - Palaniappan, Krishnaveni
AU - Ratner, Anna
AU - Huang, Jinghua
AU - Huntemann, Marcel
AU - Hajek, Patrick
AU - Ritter, Stephan
AU - Varghese, Neha
AU - Seshadri, Rekha
AU - Roux, Simon
AU - Woyke, Tanja
AU - Eloe Fadrosh, Emiley A
AU - Ivanova, Natalia
AU - Kyrpides, Nikos C.
PY - 2020
DA - 2020/10/29
PB - Oxford University Press
SP - D751-D763
IS - D1
VL - 49
PMID - 33119741
SN - 0305-1048
SN - 1362-4962
ER -
Cite this
BibTex (up to 50 authors)
Copy
@article{2020_Chen,
author = {I-Min A Chen and Ken Chu and Krishnaveni Palaniappan and Anna Ratner and Jinghua Huang and Marcel Huntemann and Patrick Hajek and Stephan Ritter and Neha Varghese and Rekha Seshadri and Simon Roux and Tanja Woyke and Emiley A Eloe Fadrosh and Natalia Ivanova and Nikos C. Kyrpides},
title = {The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities},
journal = {Nucleic Acids Research},
year = {2020},
volume = {49},
publisher = {Oxford University Press},
month = {oct},
url = {https://doi.org/10.1093/nar/gkaa939},
number = {D1},
pages = {D751--D763},
doi = {10.1093/nar/gkaa939}
}
Cite this
MLA
Copy
Chen, I-Min A., et al. “The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.” Nucleic Acids Research, vol. 49, no. D1, Oct. 2020, pp. D751-D763. https://doi.org/10.1093/nar/gkaa939.