Open Access

Nucleic Acids Research

, volume 53 , issue D1 , pages D678-D690

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

Mitja M Zdouc ¹

Kai Blin ²

Nico L L Louwen ¹

Jorge C. Navarro-Muñoz ¹

Catarina Loureiro ¹

Chantal D Bader ³

Constance B Bailey ⁴

Lena Barra ⁵

Thomas J. Booth ²

Kenan A J Bozhüyük ^{3, 6}

José D D Cediel-Becerra ⁷

Zachary Charlop-Powers ⁸

Marc G Chevrette ^{7, 9}

Yit Heng Chooi ¹⁰

Paul M Dagostino ^{3, 11}

Tristan De Rond ¹²

Elena Del Pup ¹

Katherine R. Duncan ¹³

Wenjia Gu ¹⁴

Novriyandi Hanif ¹⁵

Eric J N Helfrich ^{16, 17, 18}

Matthew Jenner ^{19, 20}

Yohei Katsuyama ^{21, 22}

Aleksandra Korenskaia ²³

Daniel Krug ^{3, 24, 25}

Vincent Libis ^{26, 27}

George A. Lund ²⁸

Shrikant Mantri ^{29, 30}

Kalindi D Morgan ³¹

Charlotte Owen ³²

Chin-Soon Phan ³³

Benjamin Philmus ³⁴

Zachary L Reitz ³⁵

Serina L. Robinson ³⁶

Kumar Saurabh Singh ^{1, 37, 38}

Robin Teufel ³⁹

Yaojun Tong ⁴⁰

Fidele Tugizimana ^{41, 42}

Dana Ulanova ^{43, 44}

Jaclyn M Winter ⁴⁵

César Aguilar ^{46, 47}

Daniel Y. Akiyama ⁴⁸

Suhad A A Al-Salihi ⁴⁹

Mohammad Alanjary ¹

Fabrizio Alberti ⁵⁰

Gajender Aleti ⁵¹

Shumukh A. Alharthi ⁵²

Mariela Y Arias Rojo ⁵³

Amr A Arishi ^{10, 54}

Hannah E Augustijn ^{1, 55}

Nicole E Avalon ⁵⁶

J Abraham Avelar-Rivas ⁵⁷

Kyle K. Axt ³⁴

Hellen B Barbieri ⁴⁸

Julio Cesar J Barbosa ⁴⁸

Lucas Gabriel Barboza Segato ⁵⁸

Susanna E. Barrett ^{59, 60}

Martin Baunach ⁶¹

Christine Beemelmanns ^{3, 24}

Dardan Beqaj ⁶²

Tim Berger ⁶³

Jordan Bernaldo-Agüero ^{64, 65, 66}

Sandra M Bettenbühl ^{16, 17}

Vincent A Bielinski ⁶⁷

Friederike Biermann ^{1, 16, 17}

Ricardo M Borges ⁶⁸

Rainer Borriss ^{69, 70}

Milena Breitenbach ^{16, 17}

Kevin M Bretscher ^{55, 71, 72}

Michael W Brigham ⁷³

Larissa Buedenbender ⁷⁴

Brodie W. Bulcock ¹⁰

Carolina Cano-Prieto ²

João Capela ⁷⁵

Victor J Carrion ^{55, 71, 76}

Riley S. Carter ^{59, 60}

Raquel Castelo-Branco ⁷⁷

Gabriel Castro-Falcón ⁵⁶

Fernanda O Chagas ⁶⁸

Esteban Charria-Girón ^{25, 78}

Ayesha Ahmed Chaudhri ^{16, 17}

Vasvi Chaudhry ⁷⁹

Hyukjae Choi ^{80, 81}

Yukyung Choi ⁸²

Roya Choupannejad ⁸³

Jakub Chromy ⁸⁴

Melinda S Chue Donahey ⁷

Melinda Chue Donahey ⁷

Jérôme Collemare ⁸³

Jack A. Connolly ⁸⁴

Kaitlin E Creamer ^{85, 86}

Max Crüsemann ⁶¹

Andres Arredondo Cruz ⁵³

Andres Cumsille ⁷

Jean-Felix Dallery ⁸⁷

Luis Caleb Damas-Ramos ²

Tito Damiani ⁸⁸

Martinus de Kruijff ³

Belén Delgado Martín ⁷⁶

Gerardo Della Sala ⁸⁹

Jelle Dillen ⁹⁰

Drew T Doering ⁹¹

Shravan R Dommaraju ^{59, 60}

Suhan Durusu ^{16, 17}

Susan Egbert ⁵⁸

Mark Ellerhorst ⁹²

Baptiste Faussurier ^{26, 27}

Artem Fetter ¹³

Marc Feuermann ⁹³

David P. Fewer ⁹⁴

Jonathan Foldi ⁸⁴

Andri Frediansyah ^{95, 96}

Erin A. Garza ⁹⁷

Athina Gavriilidou ²³

Andrea Gentile ^{98, 99}

Jennifer Gerke ¹⁰⁰

Hans Gerstmans ^{101, 102, 103}

Juan Pablo Gomez-Escribano ¹⁰⁴

Luz A. González-Salazar ⁴⁶

Natalie E. Grayson ⁵⁶

Claudio Greco ⁵²

Juan E Gris Gomez ⁴⁶

Sebastian Guerra ^{7, 9}

Shaday Guerrero Flores ¹⁰⁵

Alexey Gurevich ^{3, 24}

Karina Gutiérrez-García ¹⁰⁶

Lauren Hart ^{107, 108}

Kristina Haslinger ¹⁰⁹

Beibei He ¹¹⁰

Teo Hebra ⁸⁸

Jethro L Hemmann ¹¹¹

Hindra Hindra ^{112, 113}

Lars Höing ³⁹

Darren C. Holland ¹⁰

Jonathan E Holme ¹¹⁴

Therese Horch ²

Pavlo Hrab ^{1, 115}

Jie Hu ¹¹⁶

Thanh-Hau Huynh ^{117, 118}

Ji-Yeon Hwang ¹¹⁹

Riccardo Iacovelli ¹²⁰

Dumitrita Iftime ⁶²

Marianna Iorio ⁹⁸

Sidharth Jayachandran ²

Eunah Jeong ⁸²

Jiayi Jing ¹

Jung J Jung ^{117, 118}

Yuya Kakumu ^{16, 17}

Edward Kalkreuter ¹²¹

Kyo Bin Kang ⁸²

Sangwook Kang ^{117, 118}

Wonyong Kim ¹²²

Geum Jin Kim ^{81, 123}

Hyunwoo Kim ¹²⁴

Hyun Uk Kim ¹²⁵

Martin Klapper ¹²⁶

Robert A Koetsier ¹

Cassandra Kollten ¹¹

Ákos T. Kovács ^{55, 127}

Yelyzaveta Kriukova ^{3, 11}

Noel Kubach ²³

Aditya M Kunjapur ¹²⁸

Aleksandra K Kushnareva ^{3, 24}

Andreja Kust ^{85, 86}

Jessica Lamber ^{3, 24, 129}

Martin Larralde ¹³⁰

Niels J Larsen ²

Adrien P Launay ¹³¹

Ngoc-Thao-Hien Le ²⁶

Sarah Lebeer ^{90, 132}

Byung Tae Lee ¹²⁵

Kyungha Lee ⁸²

Katherine L Lev ^{107, 108}

Shu-Ming Li ⁶³

Yong-Xin Li ¹¹⁰

Cuauhtémoc Licona-Cassani ^{46, 133, 134}

Annette Lien ¹

Jing Liu ¹¹⁰

Julius Adam V Lopez ^{135, 136}

Nataliia V Machushynets ⁵⁵

Marla I Macias ¹³⁷

Taifo Mahmud ³⁴

Matiss Maleckis ¹³⁸

Añadir Maharai Martinez-Martinez ⁴⁶

Yvonne Mast ^{104, 139}

Marina F. Maximo ⁴⁸

Christina M Mcbride ^{107, 108}

Rose M Mclellan ^{140, 141}

Khyati Mehta Bhatt ⁸³

Chrats Melkonian ^{1, 142}

Aske Merrild ¹⁴³

Mikko Metsä-Ketelä ¹⁴⁴

Douglas A. Mitchell ⁵⁹

Alison V. Müller ^{3, 24, 129}

Giang-Son Nguyen ¹¹⁴

Hera T Nguyen ¹⁰

Timo H J Niedermeyer ¹⁴⁵

Julia H O’Hare ⁶⁸

Adam Ossowicki ^{71, 76}

Bohdan O Ostash ^{146, 147}

Hiroshi Otani ^{91, 148}

Leo Padva ⁶¹

Sunaina Paliyal ²⁹

Xinya Pan ^{55, 71, 72}

Mohit Panghal ^{29, 30}

Dana S Parade ³

Jiyoon Park ^{117, 118}

Jonathan Parra ^{149, 150, 151}

Marcos Pedraza Rubio ^{71, 76}

Huong T. PHAM ⁸²

Sacha J. Pidot ¹⁵²

Jörn Piel ¹⁵³

Bita Pourmohsenin ²³

Malik Rakhmanov ³⁹

Sangeetha Ramesh ¹⁵⁴

Michelle H Rasmussen ¹⁵⁵

Adriana Rego ⁷⁷

Raphael Reher ⁶³

Andrew J Rice ⁵⁹

Augustin Rigolet ⁵⁵

Adriana Romero-Otero ^{2, 138}

Luis Rodrigo Rosas-Becerra ^{55, 57}

Pablo Y Rosiles ¹³¹

Adriano Rutz ¹⁵⁶

Byeol Ryu ⁵⁶

Libby-Ann Sahadeo ⁵⁸

Murrel Saldanha ⁷

LUCA SALVI ⁶²

Eduardo Sánchez-Carvajal ¹⁵⁷

Christian Santos-Medellin ¹¹⁶

Nicolau Sbaraini ¹⁰

Sydney M. Schoellhorn ¹⁵⁸

Clemens Schumm ^{3, 129, 159}

Ludek Sehnal ^{62, 160}

Nelly Selem ¹⁰⁵

Anjali D. Shah ^{161, 162}

Tania K Shishido ^{83, 163}

Simon Sieber ¹⁶⁴

Velina Silviani ^{80, 81}

Garima Singh ^{165, 166}

Hemant Singh ²⁹

Nika Sokolova ¹⁰⁹

Eva C Sonnenschein ⁵²

Margherita Sosio ⁹⁸

Sven T Sowa ³⁹

Karin Steffen ¹⁶⁷

Evi Stegmann ^{62, 168}

Alena B. Streiff ¹⁵³

Alena Strüder ⁶²

Frank Surup ^{25, 78}

Tiziana Svenningsen ¹⁴³

Douglas Sweeney ⁵⁶

Judit Szenei ²

Azat Tagirdzhanov ^{3, 24}

Bin Tan ^{16, 17}

Matthew J. Tarnowski ⁵²

Barbara R Terlouw ¹

Thomas Rey ^{169, 170}

Nicola U. Thome ^{55, 102}

Laura Rosina Torres Ortega ¹

Thomas Tørring ¹⁴³

Marla Trindade ¹⁷¹

Andrew W Truman ¹⁷²

Marie Tvilum ¹⁴³

Daniel W Udwary ⁹¹

Christoph Ulbricht ⁶¹

Lisa Vader ²

Gilles P. van Wezel ^{55, 72}

Max Walmsley ⁸⁴

Randika Warnasinghe ⁵⁸

Heiner G Weddeling ³⁹

Angus N M Weir ^{101, 173}

Katherine Williams ^{161, 174}

Sam E Williams ²

Thomas E Witte ¹⁷⁵

Steffaney M Wood Rocca ^{56, 97}

Keith Yamada ¹⁴⁴

Dong Yang ¹⁷⁶

Dongsoo Yang ¹⁷⁷

Jingwei Yu ¹⁷⁸

Zhenyi Zhou ¹⁷⁹

Nadine Ziemert ²³

Lukas Zimmer ⁶¹

Alina Zimmermann ¹⁰⁴

Christian Zimmermann ¹⁸⁰

Justin J. J. van der Hooft ^{1, 41}

Roger G Linington ¹⁸¹

Tilmann Weber ²

Marnix H. Medema ¹

Hide authors affiliations Show authors affiliations: 181 affiliations

Bioinformatics Group, Wageningen University & Research , Droevendaalsesteeg 1, 6708 PB Wageningen , |

The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark , Building 220, Søltofts Plads, 2800 Kongens Lyngby,

Technical University of Denmark

Novo Nordisk

Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), Campus E8.1 , 66123 Saarbrücken,

Helmholtz Centre for Infection Research

Helmholtz Institute for Pharmaceutical Research Saarland

⁴

School of Chemistry, Chemistry Building, University of Sydney , Eastern Ave, Camperdown NSW 2050 , Sydney , New South Wales , |

⁵

Department of Chemistry, University of Konstanz, Universitätsstraße 10 , 78464 Konstanz , |

⁶

Myria Biosciences AG, Tech Park Basel , Hochbergstrasse 60C, 4057 Basel , |

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Department of Microbiology and Cell Science, University of Florida , 1355 Museum Drive, Gainesville , Florida , 32611 , |

⁸

Ginkgo Bioworks , 27 Drydock Avenue, 8th Floor, Boston , MA 02210 ,

⁹

University of Florida Genetics Institute, University of Florida , 2033 Mowry Rd, Gainesville , FL 32611 , |

¹⁰

School of Molecular Sciences, University of Western Australia , 35 Stirling Highway, Perth 6009 , |

¹¹

Chair of Technical Biochemistry, Technical University of Dresden , Bergstraße 66, 01069 Dresden , |

¹²

School of Chemical Sciences, University of Auckland , 23 Symonds St, Auckland 1010 , |

¹³

Newcastle University, Biosciences Institute , Catherine Cookson Building, Newcastle upon Tyne , NE2 4HH , |

¹⁴

Sutro Biopharma , 111 Oyster Point Blvd, South San Francisco , CA , 94080 ,

¹⁵

Department of Chemistry, Faculty of Mathematics and Natural Sciences, IPB University , Gedung Kimia Wing 1 Lantai 3, Jalan Tanjung Kampus IPB Dramaga, Bogor, Jawa Barat 16680 , |

¹⁶

Institute for Molecular Bio Science, Goethe University Frankfurt , Max-von-Laue Strasse 9, 60438 Frankfurt am Main, |

¹⁷

LOEWE Center for Translational Biodiversity Genomics (TBG) , Senckenberganlage 25, 60325 Frankfurt am Main, |

¹⁸

Senckenberg Society for Nature Research , Senckenberganlage 25, 60325 Frankfurt am Main, |

¹⁹

Department of Chemistry, University of Warwick , Gibbet Hill Rd, Coventry , CV4 7AL , |

²⁰

Warwick Integrative Synthetic Biology Centre (WISB), University of Warwick , Gibbet Hill Rd, Coventry , CV4 7AL , |

²¹

Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo , 1-1-1, Yayoi, Bunkyo-ku, Tokyo , 113-8657 , |

²²

Collaborative Research Institute for Innovative Microbiology, The University of Tokyo , 1-1-1, Yayoi, Bunkyo-ku, Tokyo , 113-8657 , |

²³

Translational Genome Mining for Natural Products, Interfaculty Institute of Microbiology and Infection Medicine Tübingen (IMIT), Interfaculty Institute for Biomedical Informatics (IBMI), University of Tübingen , Sand 14, 72076 Tübingen, |

²⁴

Saarland University, Campus E8.1 , 66123 Saarbrücken, |

²⁵

Department of Microbial Drugs, Helmholtz Centre for Infection Research (HZI) , Inhoffenstr. 7, 38124 Braunschweig , |

²⁶

Université Paris Cité - Inserm Unit 1284 , 75015 Paris ,

Paris Cité University

French Institute of Health and Medical Research

²⁷

Translational Genome Mining for Natural Products, Generare Bioscience , 75011 Paris , Île-de-France, |

²⁸

Sustainable Soils and Crops, Rothamsted Research , West Common, Harpenden , Hertfordshire , AL5 2JQ , |

²⁹

Computational Biology Lab, National Agri-Food and Biomanufacturing Institute (NABI) , Sector 81, S.A.S. Nagar , Mohali , Punjab 140306 ,

³⁰

Regional Centre for Biotechnology, NCR Biotech Science Cluster , 3rd Milestone, Faridabad -Gurugram Expressway, Faridabad - 121001 Haryana (NCR Delhi ),

³¹

Department of Chemistry and Biochemistry, University of Northern British Columbia, 3333 University Way , Prince George, BC , V2N 4Z9 , |

³²

Biochemistry and Metabolism, John Innes Centre , Norwich Research Park, Colney Lane, Norwich , NR4 7UH , |

³³

Latvian Institute of Organic Synthesis , Aizkraukles street 21, LV-1006 Riga , |

³⁴

Department of Pharmaceutical Sciences, Oregon State University , 1601 SW Jefferson Way, Corvallis , OR 97331-3507 , |

³⁵

Department of Ecology, Evolution and Marine Biology, University of California , 1169 Biological Sciences II, Santa Barbara , CA 93106 ,

³⁶

Department of Environmental Microbiology, Swiss Federal Institute of Aquatic Science and Technology , Ueberlandstrasse 133, 8600 Duebendorf, |

³⁷

Plant-Microbe Interactions, Institute of Environmental Biology, Utrecht University , 3584 CH Utrecht , |

³⁸

Faculty of Environment, Science and Economy, University of Exeter , TR10 9FE , Penryn , Cornwall , |

³⁹

Department of Pharmaceutical Sciences, University of Basel , Klingelbergstrasse 50, 4056 Basel , |

⁴⁰

State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University , Minhang District, Shanghai 200240 , |

⁴¹

Department of Biochemistry, University of Johannesburg, C2 Lab Building 224, Kingsway Campus, Cnr University & Kingsway Road , Auckland Park, Johannesburg 2006 , |

⁴²

International Research and Development (R&D) Division , Omnia Nutriology, Omnia Holdings Ltd, Building H, Monte Circle, 178 Montecasino Blvd, Fourways , Sandton , 2055 , |

⁴³

Department of Marine Resource Science, Faculty of Agriculture and Marine Science, Kochi University , 200 Otsu , Monobe, Nankoku -shi, Kochi , 783-8502 , |

⁴⁴

Marine Core Research Institute, Kochi University , 200 Otsu , Monobe, Nankoku -shi, Kochi , 783-8502 , |

⁴⁵

Department of Pharmacology and Toxicology, University of Utah , 30 S 2000 E, Salt Lake City, Utah , 84112 , |

⁴⁶

Industrial Genomics Laboratory , Centro de Biotecnología FEMSA, Escuela de Ingeniería y Ciencias, Tecnológico de Monterrey, Av. Eugenio Garza Sada 2501 sur , Nuevo Leon, 64700 , |

⁴⁷

Department of Chemistry, Purdue University , 610 Purdue Mall, West Lafayette , IN, 47907 , |

⁴⁸

Department of Organic Chemistry, Institute of Chemistry, University of Campinas (UNICAMP) , Rua Monteiro Lobato 270, Campinas, São Paulo , 13.083-862, |

⁴⁹

Department of Applied Sciences, University of Technology , Al-Sina’a St., 10066 , Baghdad , |

⁵⁰

School of Life Sciences, University of Warwick , Gibbet Hill Road, Coventry , CV4 7AL , |

⁵¹

Department of Food and Animal Sciences, College of Agriculture, Tennessee State University , Nashville , TN 37209 , |

⁵²

Department of Biosciences, Swansea University , Singleton Park, Swansea , SA2 8PP , |

⁵³

Escuela Nacional de Estudios Superiores Unidad Leon, Universidad Nacional Autonoma de Mexico , Blv. UNAM # 2011 , Predio El Saucillo y, Comunidad de los Tepetates, El Potrero, 37684 León de los Aldama, Gto.,

Universidad Nacional Autónoma de México

Universidad de León

⁵⁴

Department of Botany and Microbiology, College of Science, King Saud University , P.O. Box 2455 , Riyadh , 11451 , |

⁵⁵

Institute of Biology, Leiden University , Sylviusweg 72, 2333BE Leiden , |

⁵⁶

Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego , 9500 Gilman Drive, La Jolla , CA 92093-0212 ,

University of California, San Diego

Scripps Institution of Oceanography

⁵⁷

Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional , Km 9.6 Libramiento Norte Carretera Irapuato-León, 36824 , Irapuato , |

⁵⁸

Department of Chemistry, University of Manitoba , 66 Chancellors Circle, Winnipeg , MB R3T 2N2 , |

⁵⁹

Department of Chemistry, University of Illinois Urbana-Champaign , 600 S. Matthews Ave, Urbana , IL 61801 , |

⁶⁰

Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign , 1206 W. Gregory Drive, Urbana , IL 61801 , |

⁶¹

Institute of Pharmaceutical Biology, University of Bonn , Nussallee 6, 53115 Bonn , |

⁶²

Interfaculty Institute of Microbiology and Infection Medicine Tübingen, Microbial Bioactive Compounds, University of Tübingen , Auf der Morgenstelle 28, 72076 , Tübingen, |

⁶³

Institute of Pharmaceutical Biology and Biotechnology, University of Marburg , Robert-Koch-Str. 4, 35037 Marburg , |

⁶⁴

Departamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad 2001 , Chamilpa, 62210 Cuernavaca , Morelos , |

⁶⁵

Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos , Av. Germán Amézaga S/N, Ciudad Universitaria, UNMSM, Lima 15081, Perú |

⁶⁶

Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos , Av. Germán Amézaga S/N, Ciudad Universitaria, UNMSM, Lima 15081 , |

⁶⁷

Departamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro , Avenida Athos da Silveira Ramos, no 149, Rio de Janeiro, 21941 -909, |

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Instituto de Pesquisas de Produtos Naturais Walter Mors, Universidade Federal do Rio de Janeiro , CCS - Av. Carlos Chagas Filho, 373 - Bloco H - Cidade Universitária, Rio de Janeiro - RJ, 21941 -599, |

⁶⁹

Department of Biology, Humboldt University Berlin , Invaliden-Str. 42, 10115 Berlin , |

⁷⁰

Institute of Marine Biotechnology (IMaB), University of Greifswald ,Walter-Rathenau-Str. 49A, 17489 Greifswald , |

⁷¹

Department of Crop Protection, Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora” (IHSM-UMA-CSIC), Campus Universitario de Teatinos , 29010 , Málaga, |

⁷²

Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW) , Droevendaalsesteeg 10 6708 PB Wageningen , |

⁷³

School of Cellular and Molecular Biology, Faculty of Biological Sciences, University of Leeds , 6 Clarendon Way, Woodhouse, Leeds , LS2 3AA , |

⁷⁴

CICA – Centro Interdisciplinar de Química e Bioloxía, Universidade da Coruña, As Carballeiras, s/n, Campus de Elviña , 15071 A Coruña, |

⁷⁵

Centre of Biological Engineering, University of Minho , 4710-057 , Braga , |

⁷⁶

Department of Microbiology, Faculty of Science, Campus Universitario de Teatinos s/n, University of Málaga , 29010 Málaga, |

⁷⁷

Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto , 4450-208 Matosinhos , |

⁷⁸

Institute of Microbiology, Technische Universität Braunschweig , Spielmannstraße 7, 38106 Braunschweig , |

⁷⁹

Microbial Interactions in Plant Ecosystems, IMIT/ZMBP, Eberhard Karls University of Tübingen , 72076 Tübingen, |

⁸⁰

College of Pharmacy, Yeungnam University , 280 Daehak-ro Gyeongsan-Si, Gyeongsangbuk-do 38541 , |

⁸¹

Research Institute of Cell Culture, Yeungnam University , 280 Daehak-ro Gyeongsan-Si, Gyeongsangbuk-do 38541 , |

⁸²

College of Pharmacy and Drug Information Research Institute, Sookmyung Women's University , 100 Cheongpa-ro 47 gil, Seoul 04310 , |

⁸³

Fungal Natural Products, Westerdijk Fungal Biodiversity Institute , Uppsalalaan 8, 3584CT Utrecht , |

⁸⁴

Manchester Institute of Biotechnology, Department of Chemistry, School of Natural Sciences, Faculty of Science and Engineering, University of Manchester , 131 Princess Street, Manchester M1 7DN , |

⁸⁵

Innovative Genomics Institute, University of California Berkeley , 2151 Berkeley Way, Berkeley , CA 94720 , |

⁸⁶

Department of Earth and Planetary Science, University of California , 307 McCone Hall Berkeley, CA 94720-4767 , |

⁸⁷

Université Paris-Saclay , INRAE, UR BIOGER, 22 place de l’Agronomie, 91120 Palaiseau , |

⁸⁸

IOCB Prague, Czech Academy of Science , Flemingovo náměstí 542/2, 160 00 Praha 6, |

⁸⁹

Department of Ecosustainable Marine Biotechnology , Stazione Zoologica Anton Dohrn, Giardini del Molosiglio, Via A.F. Acton 55, 80133 Naples , |

⁹⁰

Department of Bioscience Engineering, Research Group Laboratory of Applied Microbiology and Biotechnology, University of Antwerp , Groenenborgerlaan 171, 2020 Antwerp,

State Research Center for Applied Microbiology and Biotechnology

University of Antwerp

⁹¹

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory , 1 Cyclotron Road, Berkeley , CA 94720 ,

Lawrence Berkeley National Laboratory

Joint Genome Institute

⁹²

Biochemistry of Microorganisms, Faculty of Life Sciences: Food, Nutrition, and Health, University of Bayreuth , Fritz-Hornschuch-Straße 13, 95326 Kulmbach , |

⁹³

SIB Swiss Institute of Bioinformatics , Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, |

⁹⁴

Department of Microbiology, University of Helsinki , Viikinkaari 9, 00017 , Helsinki , |

⁹⁵

Research Center for Food Technology and Processing , Research Organization of Agriculture and Food, National Research and Innovation Agency (BRIN), Jl. Jogja - Wonosari Km 31.5, DI. Yogyakarta 55861 , |

⁹⁶

Microbial Metabolites for Food Research Group, National Research and Innovation Agency (BRIN) , Jl. Jogja - Wonosari Km 31.5, Gunungkidul, DI. Yogyakarta 55861 , |

⁹⁷

Microbial and Environmental Genomics Group, J. Craig Venter Institute , 4120 Capricorn Lane, La Jolla , CA 92037,

⁹⁸

NAICONS Srl , viale Ortles 22/4, 20139 Milan ,

⁹⁹

Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Biosciences complex – Pavilion 02, Sciences and Technology Campus 11/A , 43124 Parma , |

¹⁰⁰

Institute for Organic Chemistry, Leibniz Universität Hannover , Schneiderberg 38, 30167 Hannover , |

¹⁰¹

VIB-KU Leuven Center for Microbiology, Flanders Institute for Biotechnology , Kasteelpark Arenberg 31, 3001 Leuven ,

Katholieke Universiteit Leuven

Vlaams Instituut voor Biotechnologie

¹⁰²

Department of Biology, Laboratory for Biomolecular Discovery & Engineering , KU Leuven , Kasteelpark Arenberg 31, 3001 Leuven , |

¹⁰³

Department of Biosystems , Biosensors Group, KU Leuven , Willem de Croylaan 42, box 2428 , 3001 Leuven , |

¹⁰⁴

Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures GmbH , Inhoffenstraße 7B, 38124 Braunschweig , |

¹⁰⁵

Centro de Ciencias Matemáticas National Autonomous University of Mexico (UNAM) Antigua Carretera a Pátzcuaro # 8701 , Sin Nombre, Residencial San José de la Huerta, 58089 Morelia , Mich |

¹⁰⁶

Biosphere Sciences and Engineering Division, Carnegie Institution for Science , 3520 San Martin Dr, Baltimore , MD, 21218 , |

¹⁰⁷

Program in Chemical Biology, University of Michigan , 210 Washtenaw Avenue, Ann Arbor , MI , |

¹⁰⁸

Life Sciences Institute, University of Michigan , 210 Washtenaw Avenue, Ann Arbor , Michigan , |

¹⁰⁹

Department of Chemical and Pharmaceutical Biology, University of Groningen , Antonius Deusinglaan 1, 9713AV Groningen , |

¹¹⁰

Department of Chemistry, The University of Hong Kong , Pokfulam Road, Hong Kong , |

¹¹¹

Department of Biomolecular Chemistry, Leibniz Institute for Natural Product Research and Infection Biology (HKI) , Adolf-Reichwein-Straße 23, 07745 Jena , |

¹¹²

Institute of Infectious Disease Research, McMaster University , 1280 Main Street West, Hamilton , Ontario , L8S4L8, |

¹¹³

Department of Biology, McMaster University , 1280 Main Street West, Hamilton , Ontario , L8S4K1 , |

¹¹⁴

Department of Biotechnology and Nanomedicine , SINTEF Industry , P.O.Box 4760 Torgard, N- 7465 Trondheim, |

¹¹⁵

Microbiology Group, Wageningen University & Research , Droevendaalsesteeg 1, 6708 PB Wageningen , |

¹¹⁶

Corteva Agriscience , 9330 Zionsville Road, Indianapolis , Indiana 46268 , |

¹¹⁷

Natural Products Research Institute, College of Pharmacy, Seoul National University , 101 Daehak-ro, Jongro-gu, Seoul 110-744, Korea |

¹¹⁸

Natural Products Research Institute, College of Pharmacy, Seoul National University , 101 Daehak-ro, Jongro-gu, Seoul 110-744, |

¹¹⁹

Molecular Targets Program, Center for Cancer Research, National Cancer Institute , Frederick , Maryland 21702-1201 , |

¹²⁰

Production Host Engineering Team, VTT Technical Research Centre of Finland Ltd , Maarintie 3, 02150 Espoo , |

¹²¹

Department of Chemistry and Biochemistry, Laboratories of Molecular Recognition, Florida State University , 95 Chieftan Way, Tallahassee , FL 32306 , |

¹²²

Department of Applied Biology, College of Agriculture and Life Sciences, Chonnam National University , 77 Yongbong-ro, Buk-gu, Gwangju , 61186 , |

¹²³

Department of Pharmacology, College of Medicine, Dongguk University , Dongdae-ro 123, Gyeongju-si, Gyeongsangbuk-do 38066 , |

¹²⁴

College of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University-Seoul , Dongguk-ro 32, Goyang 10326 , |

¹²⁵

Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST) , Daejeon 34141 , |

¹²⁶

Department of Paleobiotechnology, Leibniz Institute for Natural Product Research and Infection Biology Hans Knöll Institute , Beutenbergstr. 11a, 07745 Jena , |

¹²⁷

DTU Bioengineering, Technical University of Denmark , 2800 Kgs. Lyngby , |

¹²⁸

Department of Chemical and Biomolecular Engineering, University of Delaware , Newark, DE, |

¹²⁹

German Centre for Infection Research (DZIF) , Inhoffenstr. 7, 38124 Hannover -Braunschweig, |

¹³⁰

Center of Infectious Diseases, Leiden University Medical Center , Albinusdreef 2, 2333 ZA Leiden , |

¹³¹

Bioinformatics department , Endogenomiks, El Marqués, Querétaro, |

¹³²

U-MaMi Centre of Excellence , Middelheimlaan 1, 2020 Antwerp, |

¹³³

Integrative Biology Research Unit, The Institute for Obesity Research , Tecnológico de Monterrey, Av. Eugenio Garza Sada 2501 sur , Nuevo Leon, 64700 . México |

¹³⁴

Integrative Biology Research Unit, The Institute for Obesity Research , Tecnológico de Monterrey, Av. Eugenio Garza Sada 2501 sur , Nuevo Leon, 64700 . |

¹³⁵

School of Innovation and Sustainability, De La Salle University , Laguna Boulevard, LTI Spine Road, Brgys. Biñan and Malamig, 4024 Biñan City, Laguna ,

La Salle University

University of La Laguna

¹³⁶

Department of Chemistry, De La Salle University , 2401 Taft Avenue, 0922 Manila , |

¹³⁷

University of Strathclyde, Strathclyde Institute of Pharmacy and Biomedical Sciences , Glasgow , G4 0RE |

¹³⁸

Department of Biotechnology and Biomedicine, Technical University of Denmark , Søltofts Plads, Building 221, 2800 Kgs. Lyngby , |

¹³⁹

Technical University of Braunschweig, Institute of Microbiology , Rebenring 56, 38106 Braunschweig , |

¹⁴⁰

Ferrier Research Institute, Victoria University of Wellington , Kelburn Parade, Wellington 6012 , |

¹⁴¹

Maurice Wilkins Centre for Molecular Biodiscovery, Victoria University of Wellington , Kelburn Parade, Wellington 6012 , |

¹⁴²

Theoretical Biology and Bioinformatics, Department of Biology, Faculty of Science, Utrecht University , 3584 CH Utrecht , |

¹⁴³

Department of Biological and Chemical Engineering, Aarhus University , Gustav Wieds Vej 10, 8000 Aarhus C, |

¹⁴⁴

Department of Life Technologies, University of Turku , Tykistökatu 6, FIN-20520 Turku , |

¹⁴⁵

Institute of Pharmacy, Freie Universität Berlin , Königin-Luise-Str. 2+4, 14195 Berlin , |

¹⁴⁶

Department of Genetics and Biotechnology, Ivan Franko National University of Lviv , Hrushevskoho st 4, Lviv 79005 , |

¹⁴⁷

German-Ukrainian Core of Excellence in Natural Products Research , Zelena str. 20, Lviv 79005 , |

¹⁴⁸

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory , 1 Cyclotron Road, Berkeley , CA 94720 , |

¹⁴⁹

Centro de Investigaciones en Productos Naturales (CIPRONA), Universidad de Costa Rica , San José, 11501-2060 , |

¹⁵⁰

Centro Nacional de Innovaciones Biotecnológicas (CENIBiot) , CeNAT-CONARE, 1174-1200 , San José,

¹⁵¹

Instituto de Investigaciones Farmacéuticas (INIFAR), Facultad de Farmacia, Universidad de Costa Rica , San José, 11501-2060 , |

¹⁵²

Department of Microbiology and Immunology at the Doherty Institute, University of Melbourne , Grattan Street, Parkville Victoria, Victoria 3000 , |

¹⁵³

Institute of Microbiology, Eidgenössische Technische Hochschule (ETH) Zurich , Vladimir-Prelog Weg 4, 8093 Zurich , |

¹⁵⁴

Department of Plant Pathology, University of California Davis , One Shields Avenue, Davis , CA 95616-8751 , |

¹⁵⁵

Department of Chemistry, Aarhus University , Langelandsgade 140, DK- 8000 , Aarhus C, |

¹⁵⁶

Institute for Molecular Systems Biology , ETH Zürich , Otto-Stern-Weg 3, 8093 Zürich , |

¹⁵⁷

Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Centro de Biotecnología DAL, Universidad Técnica Federico Santa María , Avenida España 1680 , 2390123, Valparaíso, |

¹⁵⁸

Department of Chemistry and BioDiscovery Institute, University of North Texas , 1155 Union Circle, Denton , Texas 76203 , |

¹⁵⁹

Helmholtz Centre for Infection Research (HZI) , Inhoffenstr. 7, 38124 Braunschweig , |

¹⁶⁰

Masaryk University, Faculty of Science , RECETOX, Kamenice 753/5, 625 00 Brno , |

¹⁶¹

School of Biological Sciences, University of Bristol , Life Sciences Building, 24 Tyndall Avenue, Bristol , BS8 1TQ , |

¹⁶²

School of Chemistry, University of Bristol , Cantock's Close, Bristol, BS8 1TS , |

¹⁶³

Institute of Biotechnology, Helsinki Institute of Life Science, University of Helsinki , Viikinkaari 5, 00790 , Helsinki , |

¹⁶⁴

Department of Chemistry, University of Zurich ,Winterthurerstrasse 190, 8057 Zurich , |

¹⁶⁵

Department of Biology, University of Padova , Via U. Bassi, 58/B, 35121 Padova , |

¹⁶⁶

Botanical Garden, University of Padova , Via Orto Botanico 15, 35123 Padova , |

¹⁶⁷

Department of Biological Sciences and Evolutionary Studies Initiative, Vanderbilt University , 465 21st Ave S, Nashville , TN 37232 , |

¹⁶⁸

German Centre for Infection Research (DZIF) , Partner Site Tübingen, Hoppe-Seyler-Straße 3, 72076 Tübingen, |

¹⁶⁹

DE SANGOSSE , Bonnel, 47480 , Pont-Du-Casse,

¹⁷⁰

Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, Université Toulouse III , Toulouse INP, 24 Chemin de Borde Rouge, Auzeville, 31320 , Auzeville-Tolosane,

Université Toulouse III - Paul Sabatier

Institut National Polytechnique de Toulouse

¹⁷¹

Institute for Microbial Biotechnology and Metagenomics, Department of Biotechnology, University of the Western Cape , Robert Sobukwe Rd, Bellville, 7535 , |

¹⁷²

Department of Molecular Microbiology , John Innes Centre, Norwich Research Park, Norwich , NR4 7UH , United Kingdome, Norwich , |

¹⁷³

The Rosalind Franklin Institute, R113 Rutherford Appleton Laboratory, Harwell Science and Innovation Campus , Didcot , Oxfordshire, OX11 0QX , |

¹⁷⁴

School of Applied Sciences, University of the West of England, Frenchay Campus , Coldharbour Lane, Bristol , BS16 1QY , |

¹⁷⁵

Department of Chemistry and Biomolecular Sciences, University of Ottawa , 10 Marie Curie Private, Ottawa , Ontario , K1N 6N5 , |

¹⁷⁶

Natural Products Discovery Center, The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology, University of Florida , Jupiter , Florida 33458 , |

¹⁷⁷

Synthetic Biology and Enzyme Engineering Laboratory, Department of Chemical and Biological Engineering, Korea University , Anam-ro 145, Seongbuk-gu, Seoul 02841 , |

¹⁷⁸

Institute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Avenue, Shenzhen 518055 , |

¹⁷⁹

College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Zhejiang University of Technology , Chaowang Raod 18, Hangzhou 310014 , |

¹⁸⁰

Institute of Chemical, Environmental and Bioscience Engineering , TU Wien , Gumpendorfer Strasse 1a, 1060 Vienna , |

¹⁸¹

Department of Chemistry, Simon Fraser University, 8888 University Drive , Burnaby, British Columbia, V5A 1S6 , |

Publication type: Journal Article

Publication date: 2024-12-09

Oxford University Press

Nucleic Acids Research

scimago Q1

wos Q1

SJR: 7.776

CiteScore: 31.7

Impact factor: 13.1

ISSN: 03051048, 13624962

DOI: 10.1093/nar/gkae1115

Copy DOI

PubMed ID: 39657789

Abstract

Specialized or secondary metabolites are small molecules of biological origin, often showing potent biological activities with applications in agriculture, engineering and medicine. Usually, the biosynthesis of these natural products is governed by sets of co-regulated and physically clustered genes known as biosynthetic gene clusters (BGCs). To share information about BGCs in a standardized and machine-readable way, the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard and repository was initiated in 2015. Since its conception, MIBiG has been regularly updated to expand data coverage and remain up to date with innovations in natural product research. Here, we describe MIBiG version 4.0, an extensive update to the data repository and the underlying data standard. In a massive community annotation effort, 267 contributors performed 8304 edits, creating 557 new entries and modifying 590 existing entries, resulting in a new total of 3059 curated entries in MIBiG. Particular attention was paid to ensuring high data quality, with automated data validation using a newly developed custom submission portal prototype, paired with a novel peer-reviewing model. MIBiG 4.0 also takes steps towards a rolling release model and a broader involvement of the scientific community. MIBiG 4.0 is accessible online at https://mibig.secondarymetabolites.org/.

Found

1 citation

Lukianov Dmitrii

49 publications, 559 citations

h-index: 12

Lomonosov Moscow State University

1 citation

Antonets Kirill

🥼

PhD in Biological/biomedical sciences

54 publications, 751 citations, 15 reviews

h-index: 17

Saint Petersburg State University

All-Russian Research Institute of Agricultural Microbiology

1 citation

Pup Elena

PhD in Biological/biomedical sciences

7 publications, 118 citations

h-index: 3

Wageningen University and Research Centre

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Zdouc M. M. et al. MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration // Nucleic Acids Research. 2024. Vol. 53. No. D1. p. D678-D690.

GOST all authors (up to 50) Copy

Zdouc M. M. et al. MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration // Nucleic Acids Research. 2024. Vol. 53. No. D1. p. D678-D690.

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BibTex (up to 50 authors) Copy

@article{2024_Zdouc,

author = {Mitja M Zdouc and Kai Blin and Nico L L Louwen and Jorge C. Navarro-Muñoz and Catarina Loureiro and Chantal D Bader and Constance B Bailey and Lena Barra and Thomas J. Booth and Kenan A J Bozhüyük and José D D Cediel-Becerra and Zachary Charlop-Powers and Marc G Chevrette and Yit Heng Chooi and Paul M Dagostino and Tristan De Rond and Elena Del Pup and Katherine R. Duncan and Wenjia Gu and Novriyandi Hanif and Eric J N Helfrich and Matthew Jenner and Yohei Katsuyama and Aleksandra Korenskaia and Daniel Krug and Vincent Libis and George A. Lund and Shrikant Mantri and Kalindi D Morgan and Charlotte Owen and Chin-Soon Phan and Benjamin Philmus and Zachary L Reitz and Serina L. Robinson and Kumar Saurabh Singh and Robin Teufel and Yaojun Tong and Fidele Tugizimana and Dana Ulanova and Jaclyn M Winter and César Aguilar and Daniel Y. Akiyama and Suhad A A Al-Salihi and Mohammad Alanjary and Fabrizio Alberti and Gajender Aleti and Shumukh A. Alharthi and Mariela Y Arias Rojo and Amr A Arishi and Hannah E Augustijn and others},

title = {MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration},

journal = {Nucleic Acids Research},

year = {2024},

volume = {53},

publisher = {Oxford University Press},

month = {dec},

url = {https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkae1115/7919508},

number = {D1},

pages = {D678--D690},

doi = {10.1093/nar/gkae1115}

}

MLA

Cite this

MLA Copy

Zdouc, Mitja M., et al. “MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration.” Nucleic Acids Research, vol. 53, no. D1, Dec. 2024, pp. D678-D690. https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkae1115/7919508.

Publisher

Oxford University Press

Journal

Nucleic Acids Research

scimago Q1

wos Q1

SJR

7.776

CiteScore

31.7

Impact factor

13.1

ISSN

03051048 (Print)

13624962 (Electronic)

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