Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Publication type: Journal Article
Publication date: 2018-04-27
scimago Q1
wos Q1
SJR: 2.945
CiteScore: 13.1
Impact factor: 5.7
ISSN: 10635157, 1076836X
PubMed ID:
29718447
Genetics
Ecology, Evolution, Behavior and Systematics
Abstract
Abstract Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary history from molecular sequence data. Visualizing and analyzing the MCMC-generated samples from the posterior distribution is a key step in any non-trivial Bayesian inference. We present the software package Tracer (version 1.7) for visualizing and analyzing the MCMC trace files generated through Bayesian phylogenetic inference. Tracer provides kernel density estimation, multivariate visualization, demographic trajectory reconstruction, conditional posterior distribution summary, and more. Tracer is open-source and available at http://beast.community/tracer.
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GOST
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Rambaut A. et al. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7 // Systematic Biology. 2018. Vol. 67. No. 5. pp. 901-904.
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Rambaut A., Drummond A. J., Xie D., Baele G., Suchard M. A. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7 // Systematic Biology. 2018. Vol. 67. No. 5. pp. 901-904.
Cite this
RIS
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TY - JOUR
DO - 10.1093/sysbio/syy032
UR - https://doi.org/10.1093/sysbio/syy032
TI - Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
T2 - Systematic Biology
AU - Rambaut, Andrew
AU - Drummond, Alexei J.
AU - Xie, Dong
AU - Baele, Guy
AU - Suchard, Marc A.
PY - 2018
DA - 2018/04/27
PB - Oxford University Press
SP - 901-904
IS - 5
VL - 67
PMID - 29718447
SN - 1063-5157
SN - 1076-836X
ER -
Cite this
BibTex (up to 50 authors)
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@article{2018_Rambaut,
author = {Andrew Rambaut and Alexei J. Drummond and Dong Xie and Guy Baele and Marc A. Suchard},
title = {Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7},
journal = {Systematic Biology},
year = {2018},
volume = {67},
publisher = {Oxford University Press},
month = {apr},
url = {https://doi.org/10.1093/sysbio/syy032},
number = {5},
pages = {901--904},
doi = {10.1093/sysbio/syy032}
}
Cite this
MLA
Copy
Rambaut, Andrew, et al. “Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7.” Systematic Biology, vol. 67, no. 5, Apr. 2018, pp. 901-904. https://doi.org/10.1093/sysbio/syy032.