Open Access
Bioinformatics, volume 19, issue 12, pages 1589-1591
PISCES: a protein sequence culling server
Publication type: Journal Article
Publication date: 2003-08-11
Journal:
Bioinformatics
Quartile SCImago
Q1
Quartile WOS
Q1
Impact factor: 5.8
ISSN: 13674803, 13674811, 14602059
Biochemistry
Computer Science Applications
Molecular Biology
Statistics and Probability
Computational Mathematics
Computational Theory and Mathematics
Abstract
PISCES is a public server for culling sets of protein sequences from the Protein Data Bank (PDB) by sequence identity and structural quality criteria. PISCES can provide lists culled from the entire PDB or from lists of PDB entries or chains provided by the user. The sequence identities are obtained from PSI-BLAST alignments with position-specific substitution matrices derived from the non-redundant protein sequence database. PISCES therefore provides better lists than servers that use BLAST, which is unable to identify many relationships below 40% sequence identity and often overestimates sequence identity by aligning only well-conserved fragments. PDB sequences are updated weekly. PISCES can also cull non-PDB sequences provided by the user as a list of GenBank identifiers, a FASTA format file, or BLAST/PSI-BLAST output.
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Cite this
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BibTex |
MLA
Cite this
RIS
Copy
TY - JOUR
DO - 10.1093/bioinformatics/btg224
UR - https://doi.org/10.1093/bioinformatics/btg224
TI - PISCES: a protein sequence culling server
T2 - Bioinformatics
AU - Wang, Guo-Li
AU - Dunbrack, Roland L.
PY - 2003
DA - 2003/08/11
PB - Oxford University Press
SP - 1589-1591
IS - 12
VL - 19
SN - 1367-4803
SN - 1367-4811
SN - 1460-2059
ER -
Cite this
BibTex
Copy
@article{2003_Wang,
author = {Guo-Li Wang and Roland L. Dunbrack},
title = {PISCES: a protein sequence culling server},
journal = {Bioinformatics},
year = {2003},
volume = {19},
publisher = {Oxford University Press},
month = {aug},
url = {https://doi.org/10.1093/bioinformatics/btg224},
number = {12},
pages = {1589--1591},
doi = {10.1093/bioinformatics/btg224}
}
Cite this
MLA
Copy
Wang, Guo-Li, and Roland L. Dunbrack. “PISCES: a protein sequence culling server.” Bioinformatics, vol. 19, no. 12, Aug. 2003, pp. 1589-1591. https://doi.org/10.1093/bioinformatics/btg224.