Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil

Tatjana V. Khijniak 2
Alicia P. Zakharycheva 2
Alexander G. Elcheninov 2
Olga V. Boueva 4
Boyke Bunk 3
Ilya V. Kublanov 2
Elena V. Ariskina 4
Publication typeJournal Article
Publication date2021-06-02
scimago Q1
wos Q3
SJR0.749
CiteScore3.8
Impact factor2.0
ISSN14665026, 14665034
General Medicine
Microbiology
Ecology, Evolution, Behavior and Systematics
Abstract

A haloalkaliphilic hydrolytic actinobacterium, strain ACPA22T, was enriched and isolated in pure culture from saline alkaline soil (soda solonchak) in northeastern Mongolia. The isolate was facultatively alkaliphilic, growing at pH 6.5–10.5 (optimum at 7.3–9.0) and highly salt-tolerant, tolerating up to 3 M total Na+ as carbonates. The hydrolytic nature of ACPA22T was confirmed by two different growth-dependent methods and by the presence of multiple glycosidase-encoding genes in the genome. The 16S rRNA gene-based phylogenetic analysis demonstrated that strain ACPA22T formed a deep-branching lineage within the family Glycomycetaceae, with the highest sequence similarity value to Glycomyces buryatensis 18T (92.1 %) and Salininema proteolyticum Miq-4T (91.8 %). The average amino acid identity values (56.1–61.5 %) between ACPA22T and other Glycomycetaceae members with available genomes did not exceed the threshold reported for different genera. The cell wall of ACPA22T contained meso-diaminopimelic acid, glycine, glutamic acid and alanine in a molar ratio, characteristic of the peptidoglycan type A1γ'. The whole-cell sugars included mannose, galactose, arabinose, ribose and xylose. The major menaquinones were MK-10(Н4) and MK-11(Н4). The identified polar lipids were represented by phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannosides. In addition, the strain had a few unidentified characteristic polar lipids, including an amine-containing phospholipid with chromatographic mobility similar to that of phosphatidylinositol. The polar lipid fatty acids were dominated by anteiso-C17 : 0 and iso-C16 : 0. The genome included a chromosome of 3.94 Mbp (G+C content 61.5 mol%) encoding 3285 proteins and two plasmids of 59.8 and 14.8 kBp. Based on the data obtained in this study, a new genus and species, Natronoglycomyces albus gen. nov., sp. nov, is proposed with the type strain ACPA22T (=DSM 106290T=VKM Ac-2771T).

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Sorokin D. Y. et al. Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil // International Journal of Systematic and Evolutionary Microbiology. 2021. Vol. 71. No. 5.
GOST all authors (up to 50) Copy
Sorokin D. Y., Khijniak T. V., Zakharycheva A. P., Elcheninov A. G., Hahnke R. L., Boueva O. V., Арискина Е. В., Bunk B., Kublanov I. V., Evtushenko L. I., Ariskina E. V. Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil // International Journal of Systematic and Evolutionary Microbiology. 2021. Vol. 71. No. 5.
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RIS Copy
TY - JOUR
DO - 10.1099/ijsem.0.004804
UR - https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.004804
TI - Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil
T2 - International Journal of Systematic and Evolutionary Microbiology
AU - Sorokin, Dimitry Y.
AU - Khijniak, Tatjana V.
AU - Zakharycheva, Alicia P.
AU - Elcheninov, Alexander G.
AU - Hahnke, Richard L.
AU - Boueva, Olga V.
AU - Арискина, Е. В.
AU - Bunk, Boyke
AU - Kublanov, Ilya V.
AU - Evtushenko, Lyudmila I.
AU - Ariskina, Elena V.
PY - 2021
DA - 2021/06/02
PB - Microbiology Society
IS - 5
VL - 71
PMID - 33999794
SN - 1466-5026
SN - 1466-5034
ER -
BibTex
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@article{2021_Sorokin,
author = {Dimitry Y. Sorokin and Tatjana V. Khijniak and Alicia P. Zakharycheva and Alexander G. Elcheninov and Richard L. Hahnke and Olga V. Boueva and Е. В. Арискина and Boyke Bunk and Ilya V. Kublanov and Lyudmila I. Evtushenko and Elena V. Ariskina},
title = {Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil},
journal = {International Journal of Systematic and Evolutionary Microbiology},
year = {2021},
volume = {71},
publisher = {Microbiology Society},
month = {jun},
url = {https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.004804},
number = {5},
doi = {10.1099/ijsem.0.004804}
}