Open Access
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams
1, 2
,
Pavel V. Afonine
1
,
Gábor Bunkóczi
3
,
Vincent B. Chen
4
,
Ian W. Davis
4
,
Nathaniel Echols
1
,
Jeffrey J. Headd
4
,
Li-Wei Hung
5
,
Gary J. Kapral
4
,
Ralf W. Grosse-Kunstleve
1
,
Airlie J. McCoy
3
,
Nigel W. Moriarty
1
,
Robert Oeffner
3
,
Randy J. Read
3
,
David C. Richardson
4
,
Jane S. Richardson
4
,
Thomas C. Terwilliger
5
,
Peter H. Zwart
1
Publication type: Journal Article
Publication date: 2010-01-22
SJR: —
CiteScore: —
Impact factor: —
ISSN: 09074449, 13990047
PubMed ID:
20124702
General Medicine
Structural Biology
Abstract
Macromolecular X-ray crystallography is routinely applied to understand biological processes at a molecular level. However, significant time and effort are still required to solve and complete many of these structures because of the need for manual interpretation of complex numerical data using many software packages and the repeated use of interactive three-dimensional graphics.PHENIXhas been developed to provide a comprehensive system for macromolecular crystallographic structure solution with an emphasis on the automation of all procedures. This has relied on the development of algorithms that minimize or eliminate subjective input, the development of algorithms that automate procedures that are traditionally performed by hand and, finally, the development of a framework that allows a tight integration between the algorithms.
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GOST
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Adams P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution // Acta Crystallographica Section D Biological Crystallography. 2010. Vol. 66. No. 2. pp. 213-221.
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Adams P. D., Afonine P. V., Bunkóczi G., Chen V. B., Davis I. W., Echols N., Headd J. J., Hung L., Kapral G. J., Grosse-Kunstleve R. W., McCoy A. J., Moriarty N. W., Oeffner R., Read R. J., Richardson D. C., Richardson J. S., Terwilliger T. C., Zwart P. H. PHENIX: a comprehensive Python-based system for macromolecular structure solution // Acta Crystallographica Section D Biological Crystallography. 2010. Vol. 66. No. 2. pp. 213-221.
Cite this
RIS
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TY - JOUR
DO - 10.1107/S0907444909052925
UR - https://doi.org/10.1107/S0907444909052925
TI - PHENIX: a comprehensive Python-based system for macromolecular structure solution
T2 - Acta Crystallographica Section D Biological Crystallography
AU - Adams, Paul D.
AU - Afonine, Pavel V.
AU - Bunkóczi, Gábor
AU - Chen, Vincent B.
AU - Davis, Ian W.
AU - Echols, Nathaniel
AU - Headd, Jeffrey J.
AU - Hung, Li-Wei
AU - Kapral, Gary J.
AU - Grosse-Kunstleve, Ralf W.
AU - McCoy, Airlie J.
AU - Moriarty, Nigel W.
AU - Oeffner, Robert
AU - Read, Randy J.
AU - Richardson, David C.
AU - Richardson, Jane S.
AU - Terwilliger, Thomas C.
AU - Zwart, Peter H.
PY - 2010
DA - 2010/01/22
PB - International Union of Crystallography (IUCr)
SP - 213-221
IS - 2
VL - 66
PMID - 20124702
SN - 0907-4449
SN - 1399-0047
ER -
Cite this
BibTex (up to 50 authors)
Copy
@article{2010_Adams,
author = {Paul D. Adams and Pavel V. Afonine and Gábor Bunkóczi and Vincent B. Chen and Ian W. Davis and Nathaniel Echols and Jeffrey J. Headd and Li-Wei Hung and Gary J. Kapral and Ralf W. Grosse-Kunstleve and Airlie J. McCoy and Nigel W. Moriarty and Robert Oeffner and Randy J. Read and David C. Richardson and Jane S. Richardson and Thomas C. Terwilliger and Peter H. Zwart},
title = {PHENIX: a comprehensive Python-based system for macromolecular structure solution},
journal = {Acta Crystallographica Section D Biological Crystallography},
year = {2010},
volume = {66},
publisher = {International Union of Crystallography (IUCr)},
month = {jan},
url = {https://doi.org/10.1107/S0907444909052925},
number = {2},
pages = {213--221},
doi = {10.1107/S0907444909052925}
}
Cite this
MLA
Copy
Adams, Paul D., et al. “PHENIX: a comprehensive Python-based system for macromolecular structure solution.” Acta Crystallographica Section D Biological Crystallography, vol. 66, no. 2, Jan. 2010, pp. 213-221. https://doi.org/10.1107/S0907444909052925.