International Union of Crystallography (IUCr)

Acta Crystallographica Section D: Structural Biology

, volume 75 , issue 4 , pages 451-454

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).

Paul M. Adams ^{1, 2}

Pavel V. Afonine ¹

Kumaran Baskaran ³

Helen M. Berman ⁴

John Berrisford ⁵

Gerard Bricogne ⁶

David G. Brown ⁷

S. K. Burley ^{4, 8, 9}

Minyu Chen ¹⁰

Zukang Feng ⁴

Claus Flensburg ⁶

Aleksandras Gutmanas ⁵

J. S. Hoch ¹¹

Yasuyo Ikegawa ¹⁰

Yumiko Kengaku ¹⁰

Eugene Krissinel ¹²

G. Kurisu ¹⁰

Yu-He Liang ⁴

Dorothee Liebschner ¹

Lora Mak ⁵

JOHN M. MARKLEY ³

Nigel W. Moriarty ¹

Garib N. Murshudov ¹³

M. Noble ¹⁴

Ezra Peisach ⁴

Irina Persikova ⁴

Billy K. Poon ¹

Alexey V. Sobolev ¹

Eldon L. Ulrich ³

Sameer Velankar ⁵

Clemens Vonrhein ⁶

John Westbrook ⁴

Marcin Wojdyr ^{6, 12}

Masashi Yokochi ¹⁰

Jasmine Y. Young ⁴

Hide authors affiliations Show authors affiliations: 14 affiliations

Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA |

Department of Bioengineering, University of California, Berkeley, CA 94720, USA |

BioMagResBank (BMRB), University of Wisconsin-Madison, Madison, WI 53706, USA |

⁴

Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA |

⁵

Protein Data Bank in Europe (PDBe), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK |

⁶

Global Phasing Limited, Sheraton House, Castle Park, Cambridge, CB3 0AX, UK |

⁷

School of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, UK |

⁸

Rutgers Cancer Institute of New Jersey, Robert Wood Johnson Medical School, New Brunswick, NJ 08903, USA |

⁹

Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA 92093, USA |

¹⁰

Protein Data Bank Japan (PDBj), Institute for Protein Research, Osaka University, Osaka, 565-0871, Japan |

¹¹

BioMagResBank (BMRB), UConn Health, 263 Farmington Avenue, Farmington, CT 06030, USA |

¹²

CCP4, Research Complex at Harwell (RCaH), Rutherford Appleton Laboratory, Didcot, Oxon OX11 0FA, UK |

¹³

MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge, CB2 0QH, UK |

¹⁴

Newcastle University, Framlington Place, Newcastle Upon Tyne, NE2 4HH, UK |

Publication type: Journal Article

Publication date: 2019-04-01

International Union of Crystallography (IUCr)

Acta Crystallographica Section D: Structural Biology

scimago Q1

wos Q1

SJR: 1.821

CiteScore: 5.8

Impact factor: 3.8

ISSN: 20597983

DOI: 10.1107/S2059798319004522

Copy DOI

PubMed ID: 30988261

Structural Biology

Abstract

This letter announces that PDBx/mmCIF format files will become mandatory for crystallographic depositions to the Protein Data Bank (PDB).

Found

Top-30

Journals

	1 2 3 4 5 6 7 8
Acta Crystallographica Section D: Structural Biology	Acta Crystallographica Section D: Structural Biology, 8, 12.9% Acta Crystallographica Section D: Structural Biology 8 publications, 12.9%
eLife	eLife, 6, 9.68% eLife 6 publications, 9.68%
IUCrJ	IUCrJ, 4, 6.45% IUCrJ 4 publications, 6.45%
Methods in Enzymology	Methods in Enzymology, 3, 4.84% Methods in Enzymology 3 publications, 4.84%
PLoS Computational Biology	PLoS Computational Biology, 3, 4.84% PLoS Computational Biology 3 publications, 4.84%
Journal of Applied Crystallography	Journal of Applied Crystallography, 2, 3.23% Journal of Applied Crystallography 2 publications, 3.23%
Journal of Molecular Biology	Journal of Molecular Biology, 2, 3.23% Journal of Molecular Biology 2 publications, 3.23%
Journal of Biological Chemistry	Journal of Biological Chemistry, 2, 3.23% Journal of Biological Chemistry 2 publications, 3.23%
bioRxiv	bioRxiv, 2, 3.23% bioRxiv 2 publications, 3.23%
Lipophilicity in Drug Action and Toxicology	Lipophilicity in Drug Action and Toxicology, 2, 3.23% Lipophilicity in Drug Action and Toxicology 2 publications, 3.23%
Journal of Enzyme Inhibition and Medicinal Chemistry	Journal of Enzyme Inhibition and Medicinal Chemistry, 1, 1.61% Journal of Enzyme Inhibition and Medicinal Chemistry 1 publication, 1.61%
Acta Crystallographica Section F:Structural Biology Communications	Acta Crystallographica Section F:Structural Biology Communications, 1, 1.61% Acta Crystallographica Section F:Structural Biology Communications 1 publication, 1.61%
Crystals	Crystals, 1, 1.61% Crystals 1 publication, 1.61%
BMC Bioinformatics	BMC Bioinformatics, 1, 1.61% BMC Bioinformatics 1 publication, 1.61%
Nature Reviews Methods Primers	Nature Reviews Methods Primers, 1, 1.61% Nature Reviews Methods Primers 1 publication, 1.61%
Nature Methods	Nature Methods, 1, 1.61% Nature Methods 1 publication, 1.61%
Oncogene	Oncogene, 1, 1.61% Oncogene 1 publication, 1.61%
Trends in Biochemical Sciences	Trends in Biochemical Sciences, 1, 1.61% Trends in Biochemical Sciences 1 publication, 1.61%
Joule	Joule, 1, 1.61% Joule 1 publication, 1.61%
The Lancet Psychiatry	The Lancet Psychiatry, 1, 1.61% The Lancet Psychiatry 1 publication, 1.61%
Proteins: Structure, Function and Genetics	Proteins: Structure, Function and Genetics, 1, 1.61% Proteins: Structure, Function and Genetics 1 publication, 1.61%
Degenerative Neurological and Neuromuscular Disease	Degenerative Neurological and Neuromuscular Disease, 1, 1.61% Degenerative Neurological and Neuromuscular Disease 1 publication, 1.61%
Bioinformatics	Bioinformatics, 1, 1.61% Bioinformatics 1 publication, 1.61%
Methods in Molecular Biology	Methods in Molecular Biology, 1, 1.61% Methods in Molecular Biology 1 publication, 1.61%
Journal of Chemical Information and Modeling	Journal of Chemical Information and Modeling, 1, 1.61% Journal of Chemical Information and Modeling 1 publication, 1.61%
Structure	Structure, 1, 1.61% Structure 1 publication, 1.61%
Lecture Notes in Computer Science	Lecture Notes in Computer Science, 1, 1.61% Lecture Notes in Computer Science 1 publication, 1.61%
Nucleic Acids Research	Nucleic Acids Research, 1, 1.61% Nucleic Acids Research 1 publication, 1.61%
Angewandte Chemie	Angewandte Chemie, 1, 1.61% Angewandte Chemie 1 publication, 1.61%
	1 2 3 4 5 6 7 8

Publishers

	2 4 6 8 10 12 14 16
International Union of Crystallography (IUCr)	International Union of Crystallography (IUCr), 15, 24.19% International Union of Crystallography (IUCr) 15 publications, 24.19%
Elsevier	Elsevier, 10, 16.13% Elsevier 10 publications, 16.13%
Springer Nature	Springer Nature, 7, 11.29% Springer Nature 7 publications, 11.29%
Wiley	Wiley, 6, 9.68% Wiley 6 publications, 9.68%
Cold Spring Harbor Laboratory	Cold Spring Harbor Laboratory, 6, 9.68% Cold Spring Harbor Laboratory 6 publications, 9.68%
eLife Sciences Publications	eLife Sciences Publications, 6, 9.68% eLife Sciences Publications 6 publications, 9.68%
Public Library of Science (PLoS)	Public Library of Science (PLoS), 3, 4.84% Public Library of Science (PLoS) 3 publications, 4.84%
Taylor & Francis	Taylor & Francis, 2, 3.23% Taylor & Francis 2 publications, 3.23%
American Society for Biochemistry and Molecular Biology	American Society for Biochemistry and Molecular Biology, 2, 3.23% American Society for Biochemistry and Molecular Biology 2 publications, 3.23%
Oxford University Press	Oxford University Press, 2, 3.23% Oxford University Press 2 publications, 3.23%
MDPI	MDPI, 1, 1.61% MDPI 1 publication, 1.61%
American Chemical Society (ACS)	American Chemical Society (ACS), 1, 1.61% American Chemical Society (ACS) 1 publication, 1.61%
Oriental Scientific Publishing Company	Oriental Scientific Publishing Company, 1, 1.61% Oriental Scientific Publishing Company 1 publication, 1.61%
	2 4 6 8 10 12 14 16

We do not take into account publications without a DOI.
Statistics recalculated weekly.

Are you a researcher?

Create a profile to get free access to personal recommendations for colleagues and new articles.

Metrics

Cite this

GOST |

Cite this

GOST Copy

Adams P. M. et al. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). // Acta Crystallographica Section D: Structural Biology. 2019. Vol. 75. No. 4. pp. 451-454.

GOST all authors (up to 50) Copy

Adams P. M., Afonine P. V., Baskaran K., Berman H. M., Berrisford J., Bricogne G., Brown D. G., Burley S. K., Chen M., Feng Z., Flensburg C., Gutmanas A., Hoch J. S., Ikegawa Y., Kengaku Y., Krissinel E., Kurisu G., Liang Y., Liebschner D., Mak L., MARKLEY J. M., Moriarty N. W., Murshudov G. N., Noble M., Peisach E., Persikova I., Poon B. K., Sobolev A. V., Ulrich E. L., Velankar S., Vonrhein C., Westbrook J., Wojdyr M., Yokochi M., Young J. Y. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). // Acta Crystallographica Section D: Structural Biology. 2019. Vol. 75. No. 4. pp. 451-454.

RIS |

Cite this

RIS Copy

TY - JOUR

DO - 10.1107/S2059798319004522

UR - https://doi.org/10.1107/S2059798319004522

TI - Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).

T2 - Acta Crystallographica Section D: Structural Biology

AU - Adams, Paul M.

AU - Afonine, Pavel V.

AU - Baskaran, Kumaran

AU - Berman, Helen M.

AU - Berrisford, John

AU - Bricogne, Gerard

AU - Brown, David G.

AU - Burley, S. K.

AU - Chen, Minyu

AU - Feng, Zukang

AU - Flensburg, Claus

AU - Gutmanas, Aleksandras

AU - Hoch, J. S.

AU - Ikegawa, Yasuyo

AU - Kengaku, Yumiko

AU - Krissinel, Eugene

AU - Kurisu, G.

AU - Liang, Yu-He

AU - Liebschner, Dorothee

AU - Mak, Lora

AU - MARKLEY, JOHN M.

AU - Moriarty, Nigel W.

AU - Murshudov, Garib N.

AU - Noble, M.

AU - Peisach, Ezra

AU - Persikova, Irina

AU - Poon, Billy K.

AU - Sobolev, Alexey V.

AU - Ulrich, Eldon L.

AU - Velankar, Sameer

AU - Vonrhein, Clemens

AU - Westbrook, John

AU - Wojdyr, Marcin

AU - Yokochi, Masashi

AU - Young, Jasmine Y.

PY - 2019

DA - 2019/04/01

PB - International Union of Crystallography (IUCr)

SP - 451-454

IS - 4

VL - 75

PMID - 30988261

SN - 2059-7983

ER -

BibTex |

Cite this

BibTex (up to 50 authors) Copy

@article{2019_Adams,

author = {Paul M. Adams and Pavel V. Afonine and Kumaran Baskaran and Helen M. Berman and John Berrisford and Gerard Bricogne and David G. Brown and S. K. Burley and Minyu Chen and Zukang Feng and Claus Flensburg and Aleksandras Gutmanas and J. S. Hoch and Yasuyo Ikegawa and Yumiko Kengaku and Eugene Krissinel and G. Kurisu and Yu-He Liang and Dorothee Liebschner and Lora Mak and JOHN M. MARKLEY and Nigel W. Moriarty and Garib N. Murshudov and M. Noble and Ezra Peisach and Irina Persikova and Billy K. Poon and Alexey V. Sobolev and Eldon L. Ulrich and Sameer Velankar and Clemens Vonrhein and John Westbrook and Marcin Wojdyr and Masashi Yokochi and Jasmine Y. Young},

title = {Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).},

journal = {Acta Crystallographica Section D: Structural Biology},

year = {2019},

volume = {75},

publisher = {International Union of Crystallography (IUCr)},

month = {apr},

url = {https://doi.org/10.1107/S2059798319004522},

number = {4},

pages = {451--454},

doi = {10.1107/S2059798319004522}

}

MLA

Cite this

MLA Copy

Adams, Paul M., et al. “Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)..” Acta Crystallographica Section D: Structural Biology, vol. 75, no. 4, Apr. 2019, pp. 451-454. https://doi.org/10.1107/S2059798319004522.

Publisher

International Union of Crystallography (IUCr)

Journal

Acta Crystallographica Section D: Structural Biology

scimago Q1

wos Q1

SJR

1.821

CiteScore

5.8

Impact factor

3.8

ISSN

20597983 (Print, Electronic)

Profiles