Open Access
Open access
Science, volume 309, issue 5742, pages 1868-1871

Toward High-Resolution de Novo Structure Prediction for Small Proteins

Publication typeJournal Article
Publication date2005-09-16
Journal: Science
Quartile SCImago
Q1
Quartile WOS
Q1
Impact factor56.9
ISSN00368075, 10959203
Multidisciplinary
Abstract

The prediction of protein structure from amino acid sequence is a grand challenge of computational molecular biology. By using a combination of improved low- and high-resolution conformational sampling methods, improved atomically detailed potential functions that capture the jigsaw puzzle–like packing of protein cores, and high-performance computing, high-resolution structure prediction (<1.5 angstroms) can be achieved for small protein domains (<85 residues). The primary bottleneck to consistent high-resolution prediction appears to be conformational sampling.

Top-30

Journals

10
20
30
40
50
60
Proteins: Structure, Function and Genetics
52 publications, 7.34%
Proceedings of the National Academy of Sciences of the United States of America
22 publications, 3.11%
Bioinformatics
21 publications, 2.97%
PLoS ONE
19 publications, 2.68%
Structure
16 publications, 2.26%
Journal of Molecular Biology
15 publications, 2.12%
Protein Science
14 publications, 1.98%
Journal of Chemical Theory and Computation
14 publications, 1.98%
BMC Bioinformatics
11 publications, 1.55%
Biophysical Journal
11 publications, 1.55%
Journal of Computational Chemistry
11 publications, 1.55%
Journal of the American Chemical Society
11 publications, 1.55%
PLoS Computational Biology
10 publications, 1.41%
Journal of Biological Chemistry
10 publications, 1.41%
Nature Communications
9 publications, 1.27%
Journal of Structural Biology
9 publications, 1.27%
IEEE/ACM Transactions on Computational Biology and Bioinformatics
9 publications, 1.27%
Scientific Reports
8 publications, 1.13%
Current Opinion in Structural Biology
8 publications, 1.13%
Methods in Molecular Biology
8 publications, 1.13%
Science
8 publications, 1.13%
Nature
7 publications, 0.99%
Acta Crystallographica Section D Biological Crystallography
6 publications, 0.85%
Journal of Molecular Modeling
6 publications, 0.85%
Journal of Physical Chemistry B
6 publications, 0.85%
Journal of Chemical Physics
5 publications, 0.71%
International Journal of Molecular Sciences
5 publications, 0.71%
Chemical Reviews
5 publications, 0.71%
Journal of Bioinformatics and Computational Biology
4 publications, 0.56%
10
20
30
40
50
60

Publishers

20
40
60
80
100
120
Springer Nature
116 publications, 16.38%
Wiley
109 publications, 15.4%
Elsevier
109 publications, 15.4%
American Chemical Society (ACS)
52 publications, 7.34%
Institute of Electrical and Electronics Engineers (IEEE)
33 publications, 4.66%
Oxford University Press
33 publications, 4.66%
Public Library of Science (PLoS)
32 publications, 4.52%
Cold Spring Harbor Laboratory
28 publications, 3.95%
Proceedings of the National Academy of Sciences (PNAS)
22 publications, 3.11%
MDPI
10 publications, 1.41%
Biophysical Society
10 publications, 1.41%
Royal Society of Chemistry (RSC)
10 publications, 1.41%
American Association for the Advancement of Science (AAAS)
10 publications, 1.41%
American Society for Biochemistry and Molecular Biology
9 publications, 1.27%
International Union of Crystallography (IUCr)
7 publications, 0.99%
Taylor & Francis
7 publications, 0.99%
Association for Computing Machinery (ACM)
7 publications, 0.99%
Frontiers Media S.A.
6 publications, 0.85%
AIP Publishing
5 publications, 0.71%
Annual Reviews
5 publications, 0.71%
World Scientific
4 publications, 0.56%
Hindawi Limited
4 publications, 0.56%
American Physical Society (APS)
3 publications, 0.42%
Portland Press
3 publications, 0.42%
The Royal Society
3 publications, 0.42%
Cambridge University Press
3 publications, 0.42%
Walter de Gruyter
3 publications, 0.42%
eLife Sciences Publications
3 publications, 0.42%
Mary Ann Liebert
2 publications, 0.28%
20
40
60
80
100
120
  • We do not take into account publications without a DOI.
  • Statistics recalculated only for publications connected to researchers, organizations and labs registered on the platform.
  • Statistics recalculated weekly.

Are you a researcher?

Create a profile to get free access to personal recommendations for colleagues and new articles.
Metrics
Share
Cite this
GOST |
Cite this
GOST Copy
Bradley P., Misura K. M., Baker D. Toward High-Resolution de Novo Structure Prediction for Small Proteins // Science. 2005. Vol. 309. No. 5742. pp. 1868-1871.
GOST all authors (up to 50) Copy
Bradley P., Misura K. M., Baker D. Toward High-Resolution de Novo Structure Prediction for Small Proteins // Science. 2005. Vol. 309. No. 5742. pp. 1868-1871.
RIS |
Cite this
RIS Copy
TY - JOUR
DO - 10.1126/science.1113801
UR - https://doi.org/10.1126/science.1113801
TI - Toward High-Resolution de Novo Structure Prediction for Small Proteins
T2 - Science
AU - Bradley, Philip
AU - Misura, Kira M.S.
AU - Baker, David
PY - 2005
DA - 2005/09/16
PB - American Association for the Advancement of Science (AAAS)
SP - 1868-1871
IS - 5742
VL - 309
SN - 0036-8075
SN - 1095-9203
ER -
BibTex |
Cite this
BibTex Copy
@article{2005_Bradley,
author = {Philip Bradley and Kira M.S. Misura and David Baker},
title = {Toward High-Resolution de Novo Structure Prediction for Small Proteins},
journal = {Science},
year = {2005},
volume = {309},
publisher = {American Association for the Advancement of Science (AAAS)},
month = {sep},
url = {https://doi.org/10.1126/science.1113801},
number = {5742},
pages = {1868--1871},
doi = {10.1126/science.1113801}
}
MLA
Cite this
MLA Copy
Bradley, Philip, et al. “Toward High-Resolution de Novo Structure Prediction for Small Proteins.” Science, vol. 309, no. 5742, Sep. 2005, pp. 1868-1871. https://doi.org/10.1126/science.1113801.
Found error?