volume 33 issue 1 pages 212-224

An efficient MPI/OpenMP parallelization of the Hartree–Fock–Roothaan method for the first generation of Intel® Xeon Phi™ processor architecture

Publication typeJournal Article
Publication date2017-10-04
scimago Q1
wos Q2
SJR1.051
CiteScore7.4
Impact factor2.5
ISSN10943420, 17412846
Hardware and Architecture
Software
Theoretical Computer Science
Abstract

The Hartree–Fock method in the General Atomic and Molecular Structure System (GAMESS) quantum chemistry package represents one of the most irregular algorithms in computation today. Major steps in the calculation are the irregular computation of electron repulsion integrals and the building of the Fock matrix. These are the central components of the main self consistent field (SCF) loop, the key hot spot in electronic structure codes. By threading the Message Passing Interface (MPI) ranks in the official release of the GAMESS code, we not only speed up the main SCF loop (4× to 6× for large systems) but also achieve a significant ([Formula: see text]×) reduction in the overall memory footprint. These improvements are a direct consequence of memory access optimizations within the MPI ranks. We benchmark our implementation against the official release of the GAMESS code on the Intel® Xeon Phi™ supercomputer. Scaling numbers are reported on up to 7680 cores on Intel Xeon Phi coprocessors.

Found 
Found 

Top-30

Journals

1
2
3
4
5
Journal of Chemical Theory and Computation
5 publications, 31.25%
Journal of Chemical Physics
4 publications, 25%
International Journal of Quantum Chemistry
1 publication, 6.25%
Parallel Computing
1 publication, 6.25%
Journal of Physical Chemistry A
1 publication, 6.25%
Chemical Reviews
1 publication, 6.25%
Lecture Notes in Computer Science
1 publication, 6.25%
1
2
3
4
5

Publishers

1
2
3
4
5
6
7
American Chemical Society (ACS)
7 publications, 43.75%
AIP Publishing
4 publications, 25%
Institute of Electrical and Electronics Engineers (IEEE)
2 publications, 12.5%
Wiley
1 publication, 6.25%
Elsevier
1 publication, 6.25%
Springer Nature
1 publication, 6.25%
1
2
3
4
5
6
7
  • We do not take into account publications without a DOI.
  • Statistics recalculated weekly.

Are you a researcher?

Create a profile to get free access to personal recommendations for colleagues and new articles.
Metrics
16
Share
Cite this
GOST |
Cite this
GOST Copy
Mironov V. et al. An efficient MPI/OpenMP parallelization of the Hartree–Fock–Roothaan method for the first generation of Intel® Xeon Phi™ processor architecture // International Journal of High Performance Computing Applications. 2017. Vol. 33. No. 1. pp. 212-224.
GOST all authors (up to 50) Copy
Mironov V., Moskovsky A., Dmello M. J., Dmello M., Alexeev Y. An efficient MPI/OpenMP parallelization of the Hartree–Fock–Roothaan method for the first generation of Intel® Xeon Phi™ processor architecture // International Journal of High Performance Computing Applications. 2017. Vol. 33. No. 1. pp. 212-224.
RIS |
Cite this
RIS Copy
TY - JOUR
DO - 10.1177/1094342017732628
UR - https://journals.sagepub.com/doi/10.1177/1094342017732628
TI - An efficient MPI/OpenMP parallelization of the Hartree–Fock–Roothaan method for the first generation of Intel® Xeon Phi™ processor architecture
T2 - International Journal of High Performance Computing Applications
AU - Mironov, Vladimir
AU - Moskovsky, Alexander
AU - Dmello, Michael J
AU - Dmello, Michael
AU - Alexeev, Yuri
PY - 2017
DA - 2017/10/04
PB - SAGE
SP - 212-224
IS - 1
VL - 33
SN - 1094-3420
SN - 1741-2846
ER -
BibTex |
Cite this
BibTex (up to 50 authors) Copy
@article{2017_Mironov,
author = {Vladimir Mironov and Alexander Moskovsky and Michael J Dmello and Michael Dmello and Yuri Alexeev},
title = {An efficient MPI/OpenMP parallelization of the Hartree–Fock–Roothaan method for the first generation of Intel® Xeon Phi™ processor architecture},
journal = {International Journal of High Performance Computing Applications},
year = {2017},
volume = {33},
publisher = {SAGE},
month = {oct},
url = {https://journals.sagepub.com/doi/10.1177/1094342017732628},
number = {1},
pages = {212--224},
doi = {10.1177/1094342017732628}
}
MLA
Cite this
MLA Copy
Mironov, Vladimir, et al. “An efficient MPI/OpenMP parallelization of the Hartree–Fock–Roothaan method for the first generation of Intel® Xeon Phi™ processor architecture.” International Journal of High Performance Computing Applications, vol. 33, no. 1, Oct. 2017, pp. 212-224. https://journals.sagepub.com/doi/10.1177/1094342017732628.