Open Access

BMC Genomics, volume 20, issue 1, publication number 712

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

Drozdova Polina ^{1, 2}

Rivarola Duarte Lorena ^{2, 3, 4}

Bedulina Daria ^{1, 5}

Axenov-Gribanov Denis ^{1, 5}

Schreiber Stephan ⁶

Gurkov Anton ^{1, 5}

Shatilina Zhanna ^{1, 5}

Vereshchagina Kseniya ^{1, 5}

Lubyaga Yulia ^{1, 5}

Madyarova Ekaterina ^{1, 5}

OTTO CHRISTIAN ⁷

Jühling Frank ^{8, 9}

Busch Wibke ¹⁰

Jakob Lena ¹¹

Lucassen Magnus ¹¹

Sartoris Franz-Josef ¹¹

HACKERMÜLLER JÖRG ⁶

Hoffmann Steve ²

Pörtner Hans-Otto ¹¹

Luckenbach Till ¹⁰

Timofeyev Maxim ^{1, 5}

STADLER PETER F. ^{2, 12, 13, 14, 15}

Hide authors affiliations Show authors affiliations: 15 affiliations

Institute of Biology, Irkutsk State University, Irkutsk, Russia |

Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universität Leipzig, Leipzig, Germany |

Plant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, Germany |

⁴

Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Germany |

⁵

Baikal Research Centre, Irkutsk, Russia |

⁶

Young Investigator Group Bioinformatics & Transcriptomics, UFZ — Helmholtz Centre for Environmental Research, Leipzig, Germany |

⁷

ecSeq Bioinformatics GmbH, Leipzig, Germany |

⁸

Université De Strasbourg, Strasbourg, France |

⁹

INSERM U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France |

¹⁰

Department of Bioanalytical Ecotoxicology, UFZ – Helmholtz Centre for Environmental Research, Leipzig, Germany |

¹¹

Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany |

¹²

Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany |

¹³

Department of Theoretical Chemistry, University of Vienna, Vienna, Austria |

¹⁴

Facultad de Ciencias, Universidad National de Colombia, Sede Bogotá, Bogotá, D.C., Colombia |

¹⁵

Santa Fe institute, Santa Fe, USA |

Publication type: Journal Article

Publication date: 2019-09-13

Springer Nature

Journal: BMC Genomics

Quartile SCImago

Quartile WOS

Impact factor: 4.4

ISSN: 14712164

DOI: 10.1186/s12864-019-6024-3

Copy DOI

PubMed ID: 31519144

Genetics

Biotechnology

Abstract

Background

Lake Baikal is one of the oldest freshwater lakes and has constituted a stable environment for millions of years, in stark contrast to small, transient bodies of water in its immediate vicinity. A highly diverse endemic endemic amphipod fauna is found in one, but not the other habitat. We ask here whether differences in stress response can explain the immiscibility barrier between Lake Baikal and non-Baikal faunas. To this end, we conducted exposure experiments to increased temperature and the toxic heavy metal cadmium as stressors.

Results

Here we obtained high-quality de novo transcriptome assemblies, covering mutiple conditions, of three amphipod species, and compared their transcriptomic stress responses. Two of these species, Eulimnogammarus verrucosus and E. cyaneus, are endemic to Lake Baikal, while the Holarctic Gammarus lacustris is a potential invader.

Conclusions

Both Baikal species possess intact stress response systems and respond to elevated temperature with relatively similar changes in their expression profiles. G. lacustris reacts less strongly to the same stressors, possibly because its transcriptome is already perturbed by acclimation conditions.

By date By citations

Citations by journals

	1 2
PeerJ	PeerJ, 2, 12.5% PeerJ 2 publications, 12.5%
Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics	Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2, 12.5% Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics 2 publications, 12.5%
Scientific Reports	Scientific Reports, 1, 6.25% Scientific Reports 1 publication, 6.25%
International Journal of Molecular Sciences	International Journal of Molecular Sciences, 1, 6.25% International Journal of Molecular Sciences 1 publication, 6.25%
Journal of Invertebrate Pathology	Journal of Invertebrate Pathology, 1, 6.25% Journal of Invertebrate Pathology 1 publication, 6.25%
Science of the Total Environment	Science of the Total Environment, 1, 6.25% Science of the Total Environment 1 publication, 6.25%
Trends in Ecology and Evolution	Trends in Ecology and Evolution, 1, 6.25% Trends in Ecology and Evolution 1 publication, 6.25%
Wiley Interdisciplinary Reviews Water	Wiley Interdisciplinary Reviews Water, 1, 6.25% Wiley Interdisciplinary Reviews Water 1 publication, 6.25%
Genome Biology and Evolution	Genome Biology and Evolution, 1, 6.25% Genome Biology and Evolution 1 publication, 6.25%
Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology	Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology, 1, 6.25% Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology 1 publication, 6.25%
Biological Communications	Biological Communications, 1, 6.25% Biological Communications 1 publication, 6.25%
Open Biology	Open Biology, 1, 6.25% Open Biology 1 publication, 6.25%
Comparative biochemistry and physiology. Part A, Molecular & integrative physiology	Comparative biochemistry and physiology. Part A, Molecular & integrative physiology, 1, 6.25% Comparative biochemistry and physiology. Part A, Molecular & integrative physiology 1 publication, 6.25%
	1 2

Citations by publishers

	1 2 3 4 5 6 7
Elsevier	Elsevier, 7, 43.75% Elsevier 7 publications, 43.75%
PeerJ	PeerJ, 2, 12.5% PeerJ 2 publications, 12.5%
Springer Nature	Springer Nature, 1, 6.25% Springer Nature 1 publication, 6.25%
Multidisciplinary Digital Publishing Institute (MDPI)	Multidisciplinary Digital Publishing Institute (MDPI), 1, 6.25% Multidisciplinary Digital Publishing Institute (MDPI) 1 publication, 6.25%
Wiley	Wiley, 1, 6.25% Wiley 1 publication, 6.25%
Oxford University Press	Oxford University Press, 1, 6.25% Oxford University Press 1 publication, 6.25%
Saint Petersburg State University	Saint Petersburg State University, 1, 6.25% Saint Petersburg State University 1 publication, 6.25%
The Royal Society	The Royal Society, 1, 6.25% The Royal Society 1 publication, 6.25%
	1 2 3 4 5 6 7

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Drozdova P. et al. Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods // BMC Genomics. 2019. Vol. 20. No. 1. 712

GOST all authors (up to 50) Copy

Drozdova P., Rivarola Duarte L., Bedulina D., Axenov-Gribanov D., Schreiber S., Gurkov A., Shatilina Z., Vereshchagina K., Lubyaga Y., Madyarova E., OTTO C., Jühling F., Busch W., Jakob L., Lucassen M., Sartoris F., HACKERMÜLLER J., Hoffmann S., Pörtner H., Luckenbach T., Timofeyev M., STADLER P. F. Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods // BMC Genomics. 2019. Vol. 20. No. 1. 712

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RIS Copy

TY - JOUR

DO - 10.1186/s12864-019-6024-3

UR - https://doi.org/10.1186%2Fs12864-019-6024-3

TI - Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

T2 - BMC Genomics

AU - Drozdova, Polina

AU - Rivarola Duarte, Lorena

AU - Bedulina, Daria

AU - Axenov-Gribanov, Denis

AU - Schreiber, Stephan

AU - Gurkov, Anton

AU - Shatilina, Zhanna

AU - Vereshchagina, Kseniya

AU - Lubyaga, Yulia

AU - Madyarova, Ekaterina

AU - OTTO, CHRISTIAN

AU - Jühling, Frank

AU - Busch, Wibke

AU - Lucassen, Magnus

AU - Sartoris, Franz-Josef

AU - HACKERMÜLLER, JÖRG

AU - Hoffmann, Steve

AU - Pörtner, Hans-Otto

AU - Luckenbach, Till

AU - STADLER, PETER F.

AU - Jakob, Lena

AU - Timofeyev, Maxim

PY - 2019

DA - 2019/09/13 00:00:00

PB - Springer Nature

IS - 1

VL - 20

PMID - 31519144

SN - 1471-2164

ER -

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@article{2019_Drozdova,

author = {Polina Drozdova and Lorena Rivarola Duarte and Daria Bedulina and Denis Axenov-Gribanov and Stephan Schreiber and Anton Gurkov and Zhanna Shatilina and Kseniya Vereshchagina and Yulia Lubyaga and Ekaterina Madyarova and CHRISTIAN OTTO and Frank Jühling and Wibke Busch and Magnus Lucassen and Franz-Josef Sartoris and JÖRG HACKERMÜLLER and Steve Hoffmann and Hans-Otto Pörtner and Till Luckenbach and PETER F. STADLER and Lena Jakob and Maxim Timofeyev},

title = {Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods},

journal = {BMC Genomics},

year = {2019},

volume = {20},

publisher = {Springer Nature},

month = {sep},

url = {https://doi.org/10.1186%2Fs12864-019-6024-3},

number = {1},

doi = {10.1186/s12864-019-6024-3}

}

Found error?

Publisher

Springer Nature

Journal

BMC Genomics

Quartile SCImago

Quartile WOS

Impact factor

4.4

ISSN

14712164 (Print)

Labs

Laboratory of Pharmaceutical Biotechnology of the ISU

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