Open Access

BMC Genomics

, volume 20 , issue 1 , publication number 712

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

Polina Drozdova ^{1, 2}

Lorena Rivarola Duarte ^{2, 3, 4}

Daria Bedulina ^{1, 5}

Denis Axenov-Gribanov ^{1, 5}

Stephan Schreiber ⁶

Anton Gurkov ^{1, 5}

Zhanna Shatilina ^{1, 5}

Kseniya Vereshchagina ^{1, 5}

Yulia Lubyaga ^{1, 5}

Ekaterina Madyarova ^{1, 5}

CHRISTIAN OTTO ⁷

Frank Jühling ^{8, 9}

Wibke Busch ¹⁰

Lena Jakob ¹¹

Magnus Lucassen ¹¹

Franz-Josef Sartoris ¹¹

JÖRG HACKERMÜLLER ⁶

Steve Hoffmann ²

Hans-Otto Pörtner ¹¹

Till Luckenbach ¹⁰

Maxim Timofeyev ^{1, 5}

PETER F. STADLER ^{2, 12, 13, 14, 15}

Hide authors affiliations Show authors affiliations: 15 affiliations

Institute of Biology, Irkutsk State University, Irkutsk, Russia |

Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universität Leipzig, Leipzig, Germany |

Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Germany |

⁴

Plant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, Germany |

⁵

Baikal Research Centre, Irkutsk, Russia |

⁶

Young Investigator Group Bioinformatics & Transcriptomics, UFZ — Helmholtz Centre for Environmental Research, Leipzig, Germany |

⁷

ecSeq Bioinformatics GmbH, Leipzig, Germany |

⁸

INSERM U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France |

⁹

Université De Strasbourg, Strasbourg, France |

¹⁰

Department of Bioanalytical Ecotoxicology, UFZ – Helmholtz Centre for Environmental Research, Leipzig, Germany |

¹¹

Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany |

¹²

Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany |

¹³

Department of Theoretical Chemistry, University of Vienna, Vienna, Austria |

¹⁴

Facultad de Ciencias, Universidad National de Colombia, Sede Bogotá, Bogotá, D.C., Colombia |

¹⁵

Santa Fe institute, Santa Fe, USA |

Publication type: Journal Article

Publication date: 2019-09-13

Springer Nature

BMC Genomics

scimago Q1

wos Q2

SJR: 1.003

CiteScore: 5.9

Impact factor: 3.7

ISSN: 14712164

DOI: 10.1186/s12864-019-6024-3

Copy DOI

PubMed ID: 31519144

Genetics

Biotechnology

Abstract

Background

Lake Baikal is one of the oldest freshwater lakes and has constituted a stable environment for millions of years, in stark contrast to small, transient bodies of water in its immediate vicinity. A highly diverse endemic endemic amphipod fauna is found in one, but not the other habitat. We ask here whether differences in stress response can explain the immiscibility barrier between Lake Baikal and non-Baikal faunas. To this end, we conducted exposure experiments to increased temperature and the toxic heavy metal cadmium as stressors.

Results

Here we obtained high-quality de novo transcriptome assemblies, covering mutiple conditions, of three amphipod species, and compared their transcriptomic stress responses. Two of these species, Eulimnogammarus verrucosus and E. cyaneus, are endemic to Lake Baikal, while the Holarctic Gammarus lacustris is a potential invader.

Conclusions

Both Baikal species possess intact stress response systems and respond to elevated temperature with relatively similar changes in their expression profiles. G. lacustris reacts less strongly to the same stressors, possibly because its transcriptome is already perturbed by acclimation conditions.

Found

1 citation

Aksenov-Gribanov Denis

🥼 🤝

PhD in Biological/biomedical sciences

53 publications, 576 citations, 8 reviews

h-index: 14

Irkutsk State University

Research interests

Antioxidants

Biochemistry

Biomedical instrumentation

Biomonitoring

Bioorganic chemistry

Biotechnology

Development of drug candidates and leaders

Zoology of invertebrates

1 citation

Morgunova Maria

20 publications, 63 citations

h-index: 6

Irkutsk State University

1 citation

Pavlichenko Vasiliy

🥼 🤝

PhD in Biological/biomedical sciences

32 publications, 243 citations

h-index: 8

Siberian Institute of Plant Physiology and Biochemistry of the Siberian Branch of the Russian Academy of Sciences

Irkutsk State University

Research interests

Creating fast-growing transgenic plants

Increasing plant productivity by genetic engineering methods

Search for candidate genes to increase plant resistance to adverse environmental factors

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Drozdova P. et al. Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods // BMC Genomics. 2019. Vol. 20. No. 1. 712

GOST all authors (up to 50) Copy

Drozdova P., Rivarola Duarte L., Bedulina D., Axenov-Gribanov D., Schreiber S., Gurkov A., Shatilina Z., Vereshchagina K., Lubyaga Y., Madyarova E., OTTO C., Jühling F., Busch W., Jakob L., Lucassen M., Sartoris F., HACKERMÜLLER J., Hoffmann S., Pörtner H., Luckenbach T., Timofeyev M., STADLER P. F. Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods // BMC Genomics. 2019. Vol. 20. No. 1. 712

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RIS Copy

TY - JOUR

DO - 10.1186/s12864-019-6024-3

UR - https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6024-3

TI - Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

T2 - BMC Genomics

AU - Drozdova, Polina

AU - Rivarola Duarte, Lorena

AU - Bedulina, Daria

AU - Axenov-Gribanov, Denis

AU - Schreiber, Stephan

AU - Gurkov, Anton

AU - Shatilina, Zhanna

AU - Vereshchagina, Kseniya

AU - Lubyaga, Yulia

AU - Madyarova, Ekaterina

AU - OTTO, CHRISTIAN

AU - Jühling, Frank

AU - Busch, Wibke

AU - Jakob, Lena

AU - Lucassen, Magnus

AU - Sartoris, Franz-Josef

AU - HACKERMÜLLER, JÖRG

AU - Hoffmann, Steve

AU - Pörtner, Hans-Otto

AU - Luckenbach, Till

AU - Timofeyev, Maxim

AU - STADLER, PETER F.

PY - 2019

DA - 2019/09/13

PB - Springer Nature

IS - 1

VL - 20

PMID - 31519144

SN - 1471-2164

ER -

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BibTex (up to 50 authors) Copy

@article{2019_Drozdova,

author = {Polina Drozdova and Lorena Rivarola Duarte and Daria Bedulina and Denis Axenov-Gribanov and Stephan Schreiber and Anton Gurkov and Zhanna Shatilina and Kseniya Vereshchagina and Yulia Lubyaga and Ekaterina Madyarova and CHRISTIAN OTTO and Frank Jühling and Wibke Busch and Lena Jakob and Magnus Lucassen and Franz-Josef Sartoris and JÖRG HACKERMÜLLER and Steve Hoffmann and Hans-Otto Pörtner and Till Luckenbach and Maxim Timofeyev and PETER F. STADLER},

title = {Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods},

journal = {BMC Genomics},

year = {2019},

volume = {20},

publisher = {Springer Nature},

month = {sep},

url = {https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6024-3},

number = {1},

pages = {712},

doi = {10.1186/s12864-019-6024-3}

}

Publisher

Springer Nature

Journal

BMC Genomics

scimago Q1

wos Q2

SJR

1.003

CiteScore

5.9

Impact factor

3.7

ISSN

14712164 (Print, Electronic)

Labs

Laboratory of Pharmaceutical Biotechnology of the ISU

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