Open Access
PLoS ONE, volume 6, issue 7, pages e21800
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
Fran Supek
1
,
Matko Bošnjak
2
,
Nives Škunca
2
,
Tomislav Šmuc
2
Publication type: Journal Article
Publication date: 2011-07-18
Multidisciplinary
Abstract
Outcomes of high-throughput biological experiments are typically interpreted by statistical testing for enriched gene functional categories defined by the Gene Ontology (GO). The resulting lists of GO terms may be large and highly redundant, and thus difficult to interpret. REVIGO is a Web server that summarizes long, unintelligible lists of GO terms by finding a representative subset of the terms using a simple clustering algorithm that relies on semantic similarity measures. Furthermore, REVIGO visualizes this non-redundant GO term set in multiple ways to assist in interpretation: multidimensional scaling and graph-based visualizations accurately render the subdivisions and the semantic relationships in the data, while treemaps and tag clouds are also offered as alternative views. REVIGO is freely available at http://revigo.irb.hr/.
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GOST
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Supek F. et al. REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms // PLoS ONE. 2011. Vol. 6. No. 7. p. e21800.
GOST all authors (up to 50)
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Supek F., Bošnjak M., Škunca N., Šmuc T. REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms // PLoS ONE. 2011. Vol. 6. No. 7. p. e21800.
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RIS
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TY - JOUR
DO - 10.1371/journal.pone.0021800
UR - https://doi.org/10.1371/journal.pone.0021800
TI - REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
T2 - PLoS ONE
AU - Supek, Fran
AU - Bošnjak, Matko
AU - Škunca, Nives
AU - Šmuc, Tomislav
PY - 2011
DA - 2011/07/18
PB - Public Library of Science (PLoS)
SP - e21800
IS - 7
VL - 6
SN - 1932-6203
ER -
Cite this
BibTex (up to 50 authors)
Copy
@article{2011_Supek,
author = {Fran Supek and Matko Bošnjak and Nives Škunca and Tomislav Šmuc},
title = {REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms},
journal = {PLoS ONE},
year = {2011},
volume = {6},
publisher = {Public Library of Science (PLoS)},
month = {jul},
url = {https://doi.org/10.1371/journal.pone.0021800},
number = {7},
pages = {e21800},
doi = {10.1371/journal.pone.0021800}
}
Cite this
MLA
Copy
Supek, Fran, et al. “REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms.” PLoS ONE, vol. 6, no. 7, Jul. 2011, p. e21800. https://doi.org/10.1371/journal.pone.0021800.
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Publisher
Journal
scimago Q1
wos Q1
SJR
0.839
CiteScore
6.2
Impact factor
2.9
ISSN
19326203
(Print, Electronic)