Electronic excitations of the chromophore from the fluorescent protein asFP595 in solutions
Publication type: Journal Article
Publication date: 2005-12-23
scimago Q1
wos Q1
SJR: 1.482
CiteScore: 9.8
Impact factor: 5.5
ISSN: 15499618, 15499626
PubMed ID:
26626517
Physical and Theoretical Chemistry
Computer Science Applications
Abstract
We present the results of modeling spectral properties of the chromophore, 2-acetyl-4-(p-hydroxybenzylidene)-1-methyl-5-imidazolone (AHBMI), from the newly discovered fluorescent protein asFP595 in different solvents and compare computational and recent experimental data. The time-dependent density functional theory (TDDFT) method is used to estimate positions of spectral bands with large oscillator strengths for vertical transitions to excited states following geometry optimizations of chromophore coordinates in vacuo and in solutions. The performance of different TDDFT functionals in computing excitations for a simpler chromophore from the green fluorescent protein was tested at the preliminary stage. Properties of various protonation states (neutral, anionic, zwitterionic) for the cis and trans conformations of AHBMI are compared. By using the polarizable continuum model, the following solvents have been considered for AHBMI: water, ethanol, acetonitrile, and dimethyl sulfoxide. It is shown that the bands found experimentally in aqueous solution refer to the cis neutral and cis anionic (or trans zwitterionic) conformations. The computed band positions deviate from experimental ones in water by no more than 35 nm (0.23 eV). In accord with experimental studies, the band shifts in different solvents do not show correlation with the dielectric constant or dipole moment; however, the computed values of the shifts are much smaller than those measured experimentally for the ionic species.
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Total citations:
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GOST
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Nemukhin A., Topol I. A., BURT S. K. Electronic excitations of the chromophore from the fluorescent protein asFP595 in solutions // Journal of Chemical Theory and Computation. 2005. Vol. 2. No. 2. pp. 292-299.
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Nemukhin A., Topol I. A., BURT S. K. Electronic excitations of the chromophore from the fluorescent protein asFP595 in solutions // Journal of Chemical Theory and Computation. 2005. Vol. 2. No. 2. pp. 292-299.
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RIS
Copy
TY - JOUR
DO - 10.1021/ct050243n
UR - https://doi.org/10.1021/ct050243n
TI - Electronic excitations of the chromophore from the fluorescent protein asFP595 in solutions
T2 - Journal of Chemical Theory and Computation
AU - Nemukhin, Alexander
AU - Topol, Igor A
AU - BURT, STANLEY K.
PY - 2005
DA - 2005/12/23
PB - American Chemical Society (ACS)
SP - 292-299
IS - 2
VL - 2
PMID - 26626517
SN - 1549-9618
SN - 1549-9626
ER -
Cite this
BibTex (up to 50 authors)
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@article{2005_Nemukhin,
author = {Alexander Nemukhin and Igor A Topol and STANLEY K. BURT},
title = {Electronic excitations of the chromophore from the fluorescent protein asFP595 in solutions},
journal = {Journal of Chemical Theory and Computation},
year = {2005},
volume = {2},
publisher = {American Chemical Society (ACS)},
month = {dec},
url = {https://doi.org/10.1021/ct050243n},
number = {2},
pages = {292--299},
doi = {10.1021/ct050243n}
}
Cite this
MLA
Copy
Nemukhin, Alexander, et al. “Electronic excitations of the chromophore from the fluorescent protein asFP595 in solutions.” Journal of Chemical Theory and Computation, vol. 2, no. 2, Dec. 2005, pp. 292-299. https://doi.org/10.1021/ct050243n.
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